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Report for CCDS41658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41658.1 Public Homo sapiens 11 UQCC3 24 110 108 CCDS HistoryNCBI Gene:790955Re-query CCDS DB by CCDS ID:41658.1See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 41658.1
This CCDS representation uses a downstream start codon, which is more consistent with the presence of an N-terminal signal peptide, and with experimental evidence for cleavage of this signal peptide in PMID:15340161. It should be noted that an alternative upstream start codon, which would result in a protein that is 38 aa longer at the N-terminus, also exists. However, the use of the upstream start codon would eliminate the signal peptide, and it has a weak Kozak signal, so it is likely that leaky scanning by ribosomes will allow the use of the downstream start codon.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41658.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377953.4 ENSP00000367189.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377953.4Link to Ensembl Protein Viewer:ENSP00000367189.3Re-query CCDS DB by Nucleotide ID:ENST00000377953Re-query CCDS DB by Protein ID:ENSP00000367189
Original member Current member EBI ENST00000531323.1 ENSP00000432692.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531323.1Link to Ensembl Protein Viewer:ENSP00000432692.1Re-query CCDS DB by Nucleotide ID:ENST00000531323Re-query CCDS DB by Protein ID:ENSP00000432692
Original member Current member NCBI NM_001085372.3 NP_001078841.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085372.3Link to Protein Sequence:NP_001078841.1Re-query CCDS DB by Nucleotide ID:NM_001085372Re-query CCDS DB by Protein ID:NP_001078841Link to BLAST:NP_001078841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078841.1 93 Q6UW78 93 100% 0 0

Chromosomal Locations for CCDS 41658.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62671746 62671865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62671953 62672114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGGATTCCTTGCGGAAAATGCTGATCTCAGTCGCAATGCTGGGCGCAGGGGCTGGCGTGGGCTACGCGC
TC
CTCGTTATCGTGACCCCGGGAGAGCGGCGGAAGCAGGAAATGCTAAAGGAGATGCCACTGCAGGACCC
A
AGGAGCAGGGAGGAGGCGGCCAGGACCCAGCAGCTATTGCTGGCCACTCTGCAGGAGGCAGCGACCACG
CAG
GAGAACGTGGCCTGGAGGAAGAACTGGATGGTTGGCGGCGAAGGCGGCGCCGGCGGGAGGTCACCGT
GA


Translation (93 aa):
MDSLRKMLISVAMLGAGAGVGYALLVIVTPGERRKQEMLKEMPLQDPRSREEAARTQQLLLATLQEAATT
Q
ENVAWRKNWMVGGEGGAGGRSP




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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