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Report for CCDS2434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2434.1 Public Homo sapiens 2 RETREG2 24 110 108 CCDS HistoryNCBI Gene:79137Re-query CCDS DB by CCDS ID:2434.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430297.7 ENSP00000395249.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430297.7Link to Ensembl Protein Viewer:ENSP00000395249.2Re-query CCDS DB by Nucleotide ID:ENST00000430297Re-query CCDS DB by Protein ID:ENSP00000395249
Original member Current member NCBI NM_024293.6 NP_077269.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024293.6Link to Protein Sequence:NP_077269.3Re-query CCDS DB by Nucleotide ID:NM_024293Re-query CCDS DB by Protein ID:NP_077269Link to BLAST:NP_077269.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077269.3 543 Q8NC44 543 100% 0 0

Chromosomal Locations for CCDS 2434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219178353 219178633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219178922 219179028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219179733 219179763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219180110 219180245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219180670 219180754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219181062 219181205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219181369 219181463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219181640 219181775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219182013 219182629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGCGAGCGGCGGTGGCGGGGGTAACACTGGCGCGGGTGGGGGGCCGGGGATGGGCCTGAGCCTGGGCC
TGGGTCTGGGTCTGAGCCTAGGCATGAGTGAGGCCACCAGTGAGGCAGAGGAGGAGGCGGCCACGGCCGA
GGCGGTGGGACGCCTGGCCACGACGCTGTGGCTGCGGCTCCGCGGCTGGGAGGCGGTGCTGGCGGCGGCG
CAGCGGTTGCTGGTGTGGGAGAAGCCGCTGCACAGCCTGGTCACGGCGGCCGCGCTCAACGGCCTCTTCT
GGTTGCTGTCTTCCTCGTCCCTCCGGCCCTTCTTCCTACTCAGCGTCTCACTTTTGGCCTATTTTCTGCT
GGATCTCTGGCAGCCTCGCTTTCTCCCTGACGTTTCAGCATCATCCCCAGAGGAGCCACACTCTGACAGT
GAGGGTGCGGGGTCAGGCGCCCGGCCGCACCTGCTGAGTGTGCCCGAGTTGTGCAGATACCTGGCTGAGA
GCTGGCTCACCTTCCAGATTCACCTGCAGGAGCTGCTGCAGTACAAGAGGCAGAATCCAGCTCAGTTCTG
CGTTCGAGTCTGCTCTGGCTGTGCTGTGTTGGCTGTGTTGGGACACTATGTTCCAGGGATTATGATTTCC
TACATTGTCTTGTTGAGTATCCTGCTGTGGCCCCTGGTGGTTTATCATGAGCTGATCCAGAGGATGTACA
CTCGCCTGGAGCCCCTGCTCATGCAGCTGGACTACAGCATGAAGGCAGAAGCCAATGCCCTGCATCACAA
ACACGACAAGAGGAAGCGTCAGGGGAAGAATGCACCCCCAGGAGGTGATGAGCCACTGGCAGAGACAGAG
AGTGAAAGCGAGGCAGAGCTGGCTGGCTTCTCCCCAGTGGTGGATGTGAAGAAAACAGCATTGGCCTTGG
CCATTACAGACTCAGAGCTGTCAGATGAGGAGGCTTCTATCTTGGAGAGTGGTGGCTTCTCCGTATCCCG
GGCCACAACTCCGCAGCTGACTGATGTCTCCGAGGATTTGGACCAGCAGAGCCTGCCAAGTGAACCAGAG
GAGACCCTAAGCCGGGACCTAGGGGAGGGAGAGGAGGGAGAGCTGGCCCCTCCCGAAGACCTACTAGGCC
GTCCTCAAGCTCTGTCAAGGCAAGCCCTGGACTCGGAGGAAGAGGAAGAGGATGTGGCAGCTAAGGAAAC
CTTGTTGCGGCTCTCATCCCCCCTCCACTTTGTGAACACGCACTTCAATGGGGCAGGGTCCCCCCCAGAT
GGAGTGAAATGCTCCCCTGGAGGACCAGTGGAGACACTGAGCCCCGAGACAGTGAGTGGTGGCCTCACTG
CTCTGCCCGGCACCCTGTCACCTCCACTTTGCCTTGTTGGAAGTGACCCAGCCCCCTCCCCTTCCATTCT
CCCACCTGTTCCCCAGGACTCACCCCAGCCCCTGCCTGCCCCTGAGGAAGAAGAGGCACTCACCACTGAG
GACTTTGAGTTGCTGGATCAGGGGGAGCTGGAGCAGCTGAATGCAGAGCTGGGCTTGGAGCCAGAGACAC
CGCCAAAACCCCCTGATGCTCCACCCCTGGGGCCCGACATCCATTCTCTGGTACAGTCAGACCAAGAAGC
TCAGGCCGTGGCAGAGCCATGA

Translation (543 aa):
MASGGGGGNTGAGGGPGMGLSLGLGLGLSLGMSEATSEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAA
QRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFLLDLWQPRFLPDVSASSPEEPHSDS
EGAGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMIS
YIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEANALHHKHDKRKRQGKNAPPGGDEPLAETE
SESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPE
ETLSRDLGEGEEGELAPPEDLLGRPQALSRQALDSEEEEEDVAAKETLLRLSSPLHFVNTHFNGAGSPPD
GVKCSPGGPVETLSPETVSGGLTALPGTLSPPLCLVGSDPAPSPSILPPVPQDSPQPLPAPEEEEALTTE
DFELLDQGELEQLNAELGLEPETPPKPPDAPPLGPDIHSLVQSDQEAQAVAEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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