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Report for CCDS37947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37947.1 Public Mus musculus 19 Glis3 23 108 98 CCDS HistoryNCBI Gene:226075Re-query CCDS DB by CCDS ID:37947.1Re-query CCDS DB by GeneID:226075See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162022.7 ENSMUSP00000124635.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162022.7Link to Ensembl Protein Viewer:ENSMUSP00000124635.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162022Re-query CCDS DB by Protein ID:ENSMUSP00000124635
Original member Current member NCBI NM_175459.6 NP_780668.3 Accepted alive Link to Nucleotide Sequence:NM_175459.6Link to Protein Sequence:NP_780668.3Re-query CCDS DB by Nucleotide ID:NM_175459Re-query CCDS DB by Protein ID:NP_780668Link to BLAST:NP_780668.3

Chromosomal Locations for CCDS 37947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 28262979 28263115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28263862 28264044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28283652 28283827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28298778 28298946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28317254 28317413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28354206 28354316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28357791 28357952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28530873 28531986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28540201 28540408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28665753 28666140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2808 nt):
ATGAATGGAAGGTCATGTGGCATGAATCTCCACCGGACATCAAGAACCCCACAGGGGCCTGGCCTACTCG
GTGGTCAACATATCCCTCCCATCAGAGCCCACGCAGGCACTCCCTGCTCCTCTTCCTGTGCCAGCACGCC
GAGCCCCAGTATTGGAAGTCTTGCTAACAGTCTTCACCTCAAGATGTCCTCGGGAGCAGGGATGGCTCCT
CAGAGCAACATGGCCGCGAGTCCCATCCATCTGCCTGCCCTGAGCCCCAGGAGACAGTTACTCGCCAATG
GGAAGCCTCAGTTCCAGGTCACCCCGGCTGGTGTCATGGCAGCACCACATACTATAAAGCCCAAACAGCA
AGAATTTGGAGACCCCTTCTCTCCAAATCCTGAGAAAGGGGCTCTTGGCTTTGGGCCTCAGTGCAAGTCC
ATTGGAAAAGGCAGCTGCAACAATCTAGTGGTCACCAGCAGTCCCATGATGGTTCAGCGACTGGGACCCA
TTTCACCTCCAGCAAGCCAGGTCTCCACAGCATGCAAGCAGATCAGTCCTAGCTTACCGAGGGCAGTGAA
TGCAGCCAACCTGAATAGACCTCCTTCAGATACCAGGTCCGTTATTTTGCAAGAGTCTCTGGTGTCCACG
ACTTTGAGTCTGACAGAGAGTCAATCAGCCTTGAGTGTGAAGCAAGAGTGGTCTCAGAGCTACAGGGCTT
TCCCTTCACTTTCATCCAGCCACAGTTCCCAGAATGGCACGGACCTAGGGGACCTTCTTAGCTTGCCTCC
AGGCACGCCAGTGTCTGGCAACAGCGTCTCCAACTCGTTGCCACCCTACCTTTTCGGCATGGAAAATAGC
CACTCTCCTTACCCTAGCCCTCGGCACTCAGCAACCAGGGCCCACTCCACCCGCTCTAAGAAGAGAGCAT
TGTCCTTGTCGCCACTGTCAGATGGCATCGGGATCGACTTCAACACTATCATCCGTACTTCACCCACATC
CTTGGTCGCCTACATCAACGGACCAAGAGCCTCCCCAGCCAACCTGTCCCCACAGTCAGAGGTCTATGGG
CATTTCCTGGGTGTTCGTGGCAGCTGCATCCCCCAGTCTTGTGCAGTGGCCAGCGGGCAGAAAGGCATAT
TGGTTGCCAGTGGAGGGCATACGCTGCCGGGCTATGGAGAGGACGGTACACTGGAGTATGAACGCATGCA
GCAGCTTGAGCATGGTGGCCTGCAACCCGGACCTGTAAACAACATGGTGTTGCAGCCTGGCCTACCGGGC
CAGGATGGCCAGACAGCCAACATGCTCAAAACAGAGCGCCTGGAGGAGTTCCCCGCCAGTGCCTTGGACC
TGCCCTCTGCTCTGCCTCTCCCTCTTCCTCCGCCTCAGGGTCCCCCACCCCCATACCATGCCCATCCACA
CCTTCATCACCCAGAGCTCCTGCCTCACACCCAATCGCTGTCCCTGGCCCAGACTGGCCTGGAAGAGGAT
GGGGAGATGGAAGACTCAGGGGGGAAGCACTGCTGCCGTTGGATAGACTGCAGTGCCCTTTATGACCAGC
AGGAGGAACTGGTGAGGCACATCGAGAAGGTCCACATAGACCAACGCAAGGGGGAAGACTTCACGTGCTT
CTGGACTGGCTGCCCTAGAAGATACAAGCCTTTCAACGCACGGTATAAACTGCTGATCCACATGAGGGTC
CACTCTGGGGAGAAGCCCAACAAGTGTACGTTCGAAGGCTGCAAGAAGGCCTTTTCCAGGCTCGAGAACC
TCAAGATTCACTTGCGGAGCCACACGGGTGAGAAGCCATACTTGTGCCAGCATCCGGGCTGCCAAAAGGC
CTTCAGCAATTCCAGTGACCGTGCCAAGCACCAGAGGACACATCTTGACACTAAACCTTATGCTTGTCAA
ATTCCAGGATGTACAAAGCGCTACACAGACCCAAGCTCCCTCAGAAAGCACGTGAAGGCACATTCTTCCC
GAGAGCAGCAAGCAAGGAAAAAGCTACGGTCTAGCACTGAGCTCCATCCAGATCTCCTCACAGACTGCCT
CGCTGTGCAGCCCCTGCAGCCAGCCACGTCCCCTGGAGATGCTGCTGATCATACCGTGGGGCACTCCCCA
GGGCCGGGGCCTGGGCCAGGGCCTGGGGCTGAACTCTATTCAGCTCCCATTTTCGCCAGCAATCATTCAA
CTCGAAGTGGAACAGCTGCTGGGGCTGGGCCACCCCCACATCCTGTCAGTCACCCTTCTCCAGGACATAA
TGTACAGGGGAGCCCCCACAACCCCTCCTCCCAGTTACCTCCACTCACAGCTGTGGACGCAGGCGCTGAG
AGGTTTGCACCTCCGACTCCATCTCCTCACCACATCAGCCCGGGAAGAGTTCCAGCTCCTCCGTCACTGC
TCCAGAGAGCACAGGCTCCCCACTCCCAGCAGCCACCAGGCTCACTCCTGAAGCCCTACCAGCCAGAAAC
CAACTCTTCTTTTCAGCCAAATGGTATCCATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCC
CCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGG
ACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTC
AGGCATCACAGTGTACGATTTGCCTTCAGCTTCCTCAAGCCTCTTTGGGGAATCTCTTCGCAGTGGCCCT
GAAGACCCCACGTTCTTGCAGCTCAGTGCTGTGGACCGCTGTCCTAGCCAGCTCTCCTCTGTGTATACCG
AAGGCTGA

Translation (935 aa):
MNGRSCGMNLHRTSRTPQGPGLLGGQHIPPIRAHAGTPCSSSCASTPSPSIGSLANSLHLKMSSGAGMAP
QSNMAASPIHLPALSPRRQLLANGKPQFQVTPAGVMAAPHTIKPKQQEFGDPFSPNPEKGALGFGPQCKS
IGKGSCNNLVVTSSPMMVQRLGPISPPASQVSTACKQISPSLPRAVNAANLNRPPSDTRSVILQESLVST
TLSLTESQSALSVKQEWSQSYRAFPSLSSSHSSQNGTDLGDLLSLPPGTPVSGNSVSNSLPPYLFGMENS
HSPYPSPRHSATRAHSTRSKKRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGPRASPANLSPQSEVYG
HFLGVRGSCIPQSCAVASGQKGILVASGGHTLPGYGEDGTLEYERMQQLEHGGLQPGPVNNMVLQPGLPG
QDGQTANMLKTERLEEFPASALDLPSALPLPLPPPQGPPPPYHAHPHLHHPELLPHTQSLSLAQTGLEED
GEMEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTGCPRRYKPFNARYKLLIHMRV
HSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQ
IPGCTKRYTDPSSLRKHVKAHSSREQQARKKLRSSTELHPDLLTDCLAVQPLQPATSPGDAADHTVGHSP
GPGPGPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAE
RFAPPTPSPHHISPGRVPAPPSLLQRAQAPHSQQPPGSLLKPYQPETNSSFQPNGIHVHGFYGQLQTFCP
PHYPDSQRTVPPSGSCSMVPSFEDCLVPTSMGQAGFDVFHRAFSTHSGITVYDLPSASSSLFGESLRSGP
EDPTFLQLSAVDRCPSQLSSVYTEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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