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Report for CCDS31997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31997.1 Public Homo sapiens 13 OBI1 24 110 108 CCDS HistoryNCBI Gene:79596Re-query CCDS DB by CCDS ID:31997.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282003.7 ENSP00000282003.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282003.7Link to Ensembl Protein Viewer:ENSP00000282003.6Re-query CCDS DB by Nucleotide ID:ENST00000282003Re-query CCDS DB by Protein ID:ENSP00000282003
Original member Current member NCBI NM_024546.4 NP_078822.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024546.4Link to Protein Sequence:NP_078822.3Re-query CCDS DB by Nucleotide ID:NM_024546Re-query CCDS DB by Protein ID:NP_078822Link to BLAST:NP_078822.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078822.3 726 Q5W0B1 726 100% 0 0

Chromosomal Locations for CCDS 31997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 78615580 78617122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78635110 78635198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78638823 78639071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78642122 78642213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78644862 78644997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78659049 78659120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGGCTCAGACCGTGCAGAATGTTACATTGTCGCTCACTCTGCCCATCACGTGCCACATTTGCTTGGGGA
AGGTACGTCAGCCTGTCATATGCATCAACAACCATGTATTTTGTTCGATTTGTATTGATTTGTGGTTGAA
GAATAATAGCCAGTGTCCAGCTTGCAGAGTCCCCATCACTCCTGAAAATCCTTGCAAAGAAATTATAGGA
GGAACAAGTGAAAGTGAACCTATGCTAAGCCATACGGTCAGGAAGCATCTTCGGAAAACTAGACTTGAAT
TACTACACAAAGAATATGAGGACGAAATAGATTGTTTACAGAAAGAAGTAGAAGAGCTTAAGAGTAAAAA
TCTCAGCTTGGAGTCACAGATCAAAACTATTCTGGATCCTTTAACCTTGGTGCAGGGCAACCAAAATGAA
GACAAACATCTAGTCACAGATAATCCAAGTAAAATTAACCCAGAAACTGTAGCAGAGTGGAAGAAAAAAC
TCAGAACAGCTAATGAAATCTATGAAAAAGTGAAAGATGATGTGGATAAGCTAAAGGAGGCAAATAAAAA
ATTGAAATTGGAAAATGGTGGTCTGGTGAGGGAGAATTTACGACTGAAGGCTGAAGTTGATAACAGATCA
CCTCAAAAGTTTGGAAGGTTTGCAGTTGCTGCTCTTCAGTCCAAAGTAGAACAGTATGAGCGTGAAACCA
ATCGCCTCAAGAAAGCCCTGGAACGAAGTGATAAGTATATAGAGGAACTAGAATCTCAAGTTGCACAGCT
AAAAAATTCAAGTGAAGAGAAAGAAGCTATGAATTCCATTTGCCAGACAGCACTTTCTGCAGATGGCAAA
GGGAGCAAAGGCAGTGAGGAGGATGTGGTGTCAAAGAATCAAGGCGATAGTGCCAGAAAGCAGCCTGGCT
CATCCACCTCCAGTTCTTCTCACCTAGCGAAGCCTTCCAGCAGCAGACTGTGTGACACCAGTTCTGCAAG
GCAGGAAAGTACCAGCAAAGCAGACCTTAACTGTTCTAAGAACAAAGACCTATATCAAGAACAGGTAGAA
GTAATGTTAGATGTGACAGATACAAGTATGGATACTTATTTGGAAAGAGAATGGGGGAATAAACCAAGTG
ACTGTGTACCCTACAAAGATGAAGAACTTTATGATCTTCCAGCTCCTTGTACTCCTTTGTCCCTTAGTTG
CCTTCAGCTCAGTACTCCAGAAAATAGAGAGAGCTCTGTGGTCCAAGCAGGAGGTTCCAAAAAGCACTCA
AACCATCTCAGAAAATTGGTGTTTGATGATTTTTGTGATTCTTCAAATGTTTCTAATAAAGATTCTTCAG
AAGATGATATAAGTAGAAGTGAAAATGAAAAGAAATCAGAATGTTTTTCTTCCCCAAAGACAGGATTTTG
GGACTGTTGTTCCACAAGCTATGCCCAAAACTTAGATTTTGAAAGTTCAGAGGGGAACACGATAGCAAAT
TCTGTTGGAGAAATATCTTCAAAATTGAGTGAGAAATCAGGCTTATGTTTATCCAAAAGGTTGAATTCTA
TTCGCTCTTTTGAAATGAACCGGACAAGAACATCCAGTGAAGCATCGATGGATGCTGCTTACCTTGACAA
AATCTCTGAGTTGGATTCAATGATGTCAGAGTCAGACAACAGCAAGAGCCCTTGTAATAACGGTTTTAAG
TCACTGGATTTGGATGGGTTATCAAAGTCATCTCAAGGCAGTGAATTTCTTGAGGAACCTGATAAGTTGG
AAGAAAAAACTGAGCTAAACCTTTCCAAAGGTTCTCTAACTAATGATCAGTTAGAAAATGGAAGTGAATG
GAAACCCACTTCTTTTTTTCTCCTCTCTCCATCTGACCAAGAAATGAATGAAGATTTTTCACTCCATTCC
AGTTCTTGTCCAGTAACTAATGAAATCAAACCCCCAAGCTGCTTGTTTCAGACAGAGTTTTCCCAGGGCA
TTTTGTTAAGCAGTTCACATCGACTATTTGAAGATCAAAGATTTGGGTCATCTTTGTTTAAGATGTCCTC
AGAGATGCACAGTCTTCATAACCACCTTCAGTCTCCTTGGTCTACTTCCTTTGTGCCTGAAAAGAGGAAT
AAAAATGTGAATCAATCAACAAAAAGAAAAATCCAGAGCAGCCTTTCCAGTGCCAGCCCATCAAAAGCAA
CTAAAAGTTGA

Translation (726 aa):
MAQTVQNVTLSLTLPITCHICLGKVRQPVICINNHVFCSICIDLWLKNNSQCPACRVPITPENPCKEIIG
GTSESEPMLSHTVRKHLRKTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGNQNE
DKHLVTDNPSKINPETVAEWKKKLRTANEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRS
PQKFGRFAVAALQSKVEQYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGK
GSKGSEEDVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQEQVE
VMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRESSVVQAGGSKKHS
NHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIAN
SVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSEASMDAAYLDKISELDSMMSESDNSKSPCNNGFK
SLDLDGLSKSSQGSEFLEEPDKLEEKTELNLSKGSLTNDQLENGSEWKPTSFFLLSPSDQEMNEDFSLHS
SSCPVTNEIKPPSCLFQTEFSQGILLSSSHRLFEDQRFGSSLFKMSSEMHSLHNHLQSPWSTSFVPEKRN
KNVNQSTKRKIQSSLSSASPSKATKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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