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Report for CCDS3017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3017.1 Public Homo sapiens 3 HSPBAP1 24 110 108 CCDS HistoryNCBI Gene:79663Re-query CCDS DB by CCDS ID:3017.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306103.3 ENSP00000302562.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306103.3Link to Ensembl Protein Viewer:ENSP00000302562.2Re-query CCDS DB by Nucleotide ID:ENST00000306103Re-query CCDS DB by Protein ID:ENSP00000302562
Original member Current member NCBI NM_024610.6 NP_078886.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024610.6Link to Protein Sequence:NP_078886.2Re-query CCDS DB by Nucleotide ID:NM_024610Re-query CCDS DB by Protein ID:NP_078886Link to BLAST:NP_078886.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078886.2 488 Q96EW2-1 488 100% 0 0

Chromosomal Locations for CCDS 3017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122740345 122740875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122741003 122741113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122752591 122752674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122755260 122755431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122759224 122759360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122768701 122768882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122777721 122777906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122793617 122793680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCAGCAGGCTCCGAGGCGACCACTCCTGTGATCGTTGCGGCTGGGGCTGGAGGGGAGGAAGGTGAAC
ATGTCAAACCTTTTAAGCCAGAGAAAGCAAAAGAAATTATCATGTCTTTACAACAACCTGCAATCTTCTG
TAACATGGTGTTTGATTGGCCAGCACGACACTGGAATGCTAAATACCTTTCGCAGGTCCTTCATGGCAAG
CAGATACGATTCAGAATGGGGATGAAAAGCATGAGCACAGTTCCTCAGTTTGAAACTACATGTAATTACG
TAGAAGCTACACTCGAAGAGTTTCTGACCTGGAACTGTGACCAGTCTAGTATTTCTGGACCATTTAGAGA
TTATGACCATTCCAAGTTCTGGGCTTATGCTGACTATAAATATTTTGTCAGTCTATTTGAAGACAAGACA
GATCTTTTCCAGGATGTGAAATGGTCTGACTTCGGGTTTCCTGGAAGAAATGGACAGGAAAGTACATTGT
GGATTGGCTCCTTGGGAGCCCACACACCCTGTCATCTGGACTCCTATGGTTGTAACTTGGTATTCCAGGT
ACAAGGAAGGAAACGATGGCATCTCTTTCCTCCTGAAGATACTCCTTTCCTTTATCCAACTAGAATCCCT
TATGAAGAATCTAGTGTGTTCAGTAAAATCAATGTTGTCAATCCTGATTTAAAGCGTTTTCCTCAGTTCC
GGAAAGCTCAAAGACATGCGGTTACACTGAGCCCAGGACAGGTTCTCTTTGTTCCCAGACACTGGTGGCA
TTACGTAGAATCCATTGATCCTGTCACTGTCAGTATAAACTCATGGATTGAACTGGAAGAGGATCACCTA
GCCCGGGTAGAAGAGGCAATCACCCGTATGCTTGTGTGTGCCCTGAAAACTGCAGAGAATCCACAAAATA
CCAGAGCCTGGTTAAACCCCACTGAGGTTGAGGAAACGTCCCATGCAGTCAACTGTTGCTACTTAAATGC
AGCTGTTTCTGCATTTTTTGATCGCTGCAGAACATCTGAGGTAGTAGAAATCCAAGCACTGAGAACAGAT
GGAGAGCACATGAAAAAGGAAGAATTAAATGTGTGCAACCACATGGAGGTGGGCCAAACAGGTAGCCAGA
ACTTGACCACAGGAACAGACAAACCGGAGGCAGCAAGTCCCTTTGGCCCTGATCTGGTCCCTGTAGCACA
GAGGTCCGAAGAACCGCCTTCAGAAAGAGGAGGCATATTTGGAAGTGATGGGAAAGACTTTGTGGACAAG
GATGGAGAACACTTTGGAAAATTGCATTGTGCCAAGAGACAACAAATAATGAGCAACAGTGAAAATGCAA
TTGAGGAACAGATTGCCTCAAATACTACTACGACTCCTCAAACATTCATTTCTACGGATGACTTGCTGGA
CTGCTTGGTGAATCCACAAGTAACCAGGATAGTGGCACAACTTTTGATACAAGGAAGAAGTTTATGA

Translation (488 aa):
MAAGSEATTPVIVAAGAGGEEGEHVKPFKPEKAKEIIMSLQQPAIFCNMVFDWPARHWNAKYLSQVLHGK
QIRFRMGMKSMSTVPQFETTCNYVEATLEEFLTWNCDQSSISGPFRDYDHSKFWAYADYKYFVSLFEDKT
DLFQDVKWSDFGFPGRNGQESTLWIGSLGAHTPCHLDSYGCNLVFQVQGRKRWHLFPPEDTPFLYPTRIP
YEESSVFSKINVVNPDLKRFPQFRKAQRHAVTLSPGQVLFVPRHWWHYVESIDPVTVSINSWIELEEDHL
ARVEEAITRMLVCALKTAENPQNTRAWLNPTEVEETSHAVNCCYLNAAVSAFFDRCRTSEVVEIQALRTD
GEHMKKEELNVCNHMEVGQTGSQNLTTGTDKPEAASPFGPDLVPVAQRSEEPPSERGGIFGSDGKDFVDK
DGEHFGKLHCAKRQQIMSNSENAIEEQIASNTTTTPQTFISTDDLLDCLVNPQVTRIVAQLLIQGRSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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