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Report for CCDS390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
390.1 Public Homo sapiens 1 KIAA0319L 24 110 108 CCDS HistoryNCBI Gene:79932Re-query CCDS DB by CCDS ID:390.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325722.8 ENSP00000318406.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325722.8Link to Ensembl Protein Viewer:ENSP00000318406.3Re-query CCDS DB by Nucleotide ID:ENST00000325722Re-query CCDS DB by Protein ID:ENSP00000318406
Original member Current member EBI ENST00000426982.7 ENSP00000395883.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426982.7Link to Ensembl Protein Viewer:ENSP00000395883.3Re-query CCDS DB by Nucleotide ID:ENST00000426982Re-query CCDS DB by Protein ID:ENSP00000395883
Original member Current member EBI ENST00000469892.6 ENSP00000419396.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469892.6Link to Ensembl Protein Viewer:ENSP00000419396.2Re-query CCDS DB by Nucleotide ID:ENST00000469892Re-query CCDS DB by Protein ID:ENSP00000419396
Original member Current member NCBI NM_024874.5 NP_079150.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024874.5Link to Protein Sequence:NP_079150.3Re-query CCDS DB by Nucleotide ID:NM_024874Re-query CCDS DB by Protein ID:NP_079150Link to BLAST:NP_079150.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079150.3 1049 Q8IZA0-1 1049 100% 0 0

Chromosomal Locations for CCDS 390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 35434894 35435081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35441047 35441138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35442246 35442336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35442906 35443028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35444161 35444303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35448173 35448332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35449867 35450005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35450358 35450509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35451628 35451776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35453557 35453689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35454362 35454485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35456013 35456241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35460305 35460437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35462621 35462713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35466608 35466695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35470863 35470960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35474805 35474906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35478966 35479212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35506612 35507135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35554350 35554491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3150 nt):
ATGGAGAAGAGGCTGGGAGTCAAGCCAAATCCTGCTTCCTGGATTTTATCAGGATATTATTGGCAGACAT
CTGCGAAGTGGTTGAGAAGCCTGTACCTGTTTTATACTTGCTTTTGCTTCAGCGTTCTGTGGTTGTCAAC
AGATGCCAGTGAGAGCAGGTGCCAGCAGGGGAAGACACAATTTGGAGTTGGCCTGAGATCTGGGGGAGAA
AATCACCTCTGGCTTCTTGAAGGAACCCCCTCTCTCCAGTCATGTTGGGCTGCCTGCTGCCAGGACTCTG
CCTGCCATGTCTTTTGGTGGCTAGAAGGGATGTGCATTCAGGCAGACTGCAGCAGGCCCCAGAGCTGCCG
GGCTTTTAGGACACACTCCTCCAATTCCATGCTGGTGTTTTTAAAAAAATTCCAAACTGCAGATGATTTG
GGCTTTCTACCTGAAGATGATGTACCACATCTTCTGGGGCTAGGTTGGAACTGGGCATCTTGGAGGCAGA
GCCCACCCAGAGCTGCACTCAGACCTGCTGTATCTTCCAGTGACCAGCAGAGCTTAATCAGGAAGCTTCA
GAAGAGAGGTAGTCCCAGTGACGTAGTTACACCTATAGTGACACAGCATTCTAAAGTGAATGACTCCAAC
GAATTAGGTGGTCTGACTACCAGTGGCTCTGCAGAGGTCCACAAGGCGATTACAATTTCCAGTCCCCTAA
CCACAGACCTGACTGCAGAGCTGTCTGGTGGGCCAAAGAATGTATCAGTGCAACCTGAAATATCAGAGGG
TCTTGCTACTACGCCCAGCACTCAACAAGTAAAAAGTTCTGAGAAAACCCAGATTGCTGTCCCCCAGCCA
GTGGCTCCCTCCTACAGTTATGCTACCCCTACCCCCCAGGCCTCTTTCCAGAGCACCTCAGCACCATACC
CAGTTATAAAGGAACTGGTGGTATCTGCTGGAGAGAGTGTCCAGATAACCCTGCCTAAGAATGAAGTTCA
ATTAAATGCATATGTTCTCCAAGAACCACCTAAAGGAGAAACCTACACCTACGACTGGCAGCTGATTACT
CATCCTAGAGACTACAGTGGAGAAATGGAAGGGAAACATTCCCAGATCCTCAAACTATCGAAGCTCACTC
CAGGCCTGTATGAATTCAAAGTGATTGTAGAGGGTCAAAATGCCCATGGGGAAGGCTATGTGAACGTGAC
AGTCAAGCCAGAGCCCCGTAAGAATCGGCCCCCCATTGCTATTGTGTCACCTCAGTTCCAGGAGATCTCT
TTGCCAACCACTTCTACAGTCATTGATGGCAGTCAAAGCACTGATGATGATAAAATCGTTCAGTACCATT
GGGAAGAACTTAAGGGGCCTCTAAGAGAAGAGAAGATTTCTGAAGATACAGCCATATTAAAACTAAGTAA
ACTCGTCCCTGGGAACTACACTTTCAGCTTGACTGTAGTAGACTCTGATGGAGCTACCAACTCTACTACT
GCAAACCTGACAGTGAACAAAGCTGTGGATTACCCCCCTGTGGCCAACGCAGGCCCCAACCAAGTGATCA
CCCTGCCCCAAAACTCCATCACCCTCTTTGGGAACCAGAGCACTGATGATCATGGCATCACCAGCTATGA
GTGGTCACTCAGCCCAAGCAGCAAAGGGAAAGTGGTGGAGATGCAGGGTGTTAGAACACCAACCTTACAG
CTCTCTGCGATGCAAGAAGGAGACTACACTTACCAGCTCACAGTGACTGACACAATAGGACAGCAGGCCA
CTGCTCAAGTGACTGTTATTGTGCAACCTGAAAACAATAAGCCTCCTCAGGCAGATGCAGGCCCAGATAA
AGAGCTGACCCTTCCTGTGGATAGCACAACCCTGGATGGCAGCAAGAGCTCAGATGATCAGAAAATTATC
TCATATCTCTGGGAAAAAACACAGGGACCTGATGGGGTGCAGCTCGAGAATGCTAACAGCAGTGTTGCTA
CTGTGACTGGGCTGCAAGTGGGGACCTATGTGTTCACCTTGACTGTCAAAGATGAGAGGAACCTGCAAAG
CCAGAGCTCTGTGAATGTCATTGTCAAAGAAGAAATAAACAAACCACCTATAGCCAAGATAACTGGGAAT
GTGGTGATTACCCTACCCACGAGCACAGCAGAGCTGGATGGCTCTAAGTCCTCAGATGACAAGGGAATAG
TCAGCTACCTCTGGACTCGAGATGAGGGGAGCCCAGCAGCAGGGGAGGTGTTAAATCACTCTGACCATCA
CCCTATCCTTTTTCTTTCAAACCTGGTTGAGGGAACCTACACTTTTCACCTGAAAGTGACCGATGCAAAG
GGTGAGAGTGACACAGACCGGACCACTGTGGAGGTGAAACCTGATCCCAGGAAAAACAACCTGGTGGAGA
TCATCTTGGATATCAACGTCAGTCAGCTAACTGAGAGGCTGAAGGGGATGTTCATCCGCCAGATTGGGGT
CCTCCTGGGGGTGCTGGATTCCGACATCATTGTGCAAAAGATTCAGCCGTACACGGAGCAGAGCACCAAA
ATGGTATTTTTTGTTCAAAACGAGCCTCCCCACCAGATCTTCAAAGGCCATGAGGTGGCAGCGATGCTCA
AGAGTGAGCTGCGGAAGCAAAAGGCAGACTTTTTGATATTCAGAGCCTTGGAAGTCAACACTGTCACATG
TCAGCTGAACTGTTCCGACCATGGCCACTGTGACTCGTTCACCAAACGCTGTATCTGTGACCCTTTTTGG
ATGGAGAATTTCATCAAGGTGCAGCTGAGGGATGGAGACAGCAACTGTGAGTGGAGCGTGTTATATGTTA
TCATTGCTACCTTTGTCATTGTTGTTGCCTTGGGAATCCTGTCTTGGACTGTGATCTGTTGTTGTAAGAG
GCAAAAAGGAAAACCCAAGAGGAAAAGCAAGTACAAGATCCTGGATGCCACGGATCAGGAAAGCCTGGAG
CTGAAGCCAACCTCCCGAGCAGGCATCAAACAGAAAGGCCTTTTGCTAAGTAGCAGCCTGATGCACTCCG
AGTCAGAGCTGGACAGCGATGATGCCATCTTTACATGGCCAGACCGAGAGAAGGGCAAACTCCTGCATGG
TCAGAATGGCTCTGTACCCAACGGGCAGACCCCTCTGAAGGCCAGGAGCCCGCGGGAGGAGATCCTGTAG

Translation (1049 aa):
MEKRLGVKPNPASWILSGYYWQTSAKWLRSLYLFYTCFCFSVLWLSTDASESRCQQGKTQFGVGLRSGGE
NHLWLLEGTPSLQSCWAACCQDSACHVFWWLEGMCIQADCSRPQSCRAFRTHSSNSMLVFLKKFQTADDL
GFLPEDDVPHLLGLGWNWASWRQSPPRAALRPAVSSSDQQSLIRKLQKRGSPSDVVTPIVTQHSKVNDSN
ELGGLTTSGSAEVHKAITISSPLTTDLTAELSGGPKNVSVQPEISEGLATTPSTQQVKSSEKTQIAVPQP
VAPSYSYATPTPQASFQSTSAPYPVIKELVVSAGESVQITLPKNEVQLNAYVLQEPPKGETYTYDWQLIT
HPRDYSGEMEGKHSQILKLSKLTPGLYEFKVIVEGQNAHGEGYVNVTVKPEPRKNRPPIAIVSPQFQEIS
LPTTSTVIDGSQSTDDDKIVQYHWEELKGPLREEKISEDTAILKLSKLVPGNYTFSLTVVDSDGATNSTT
ANLTVNKAVDYPPVANAGPNQVITLPQNSITLFGNQSTDDHGITSYEWSLSPSSKGKVVEMQGVRTPTLQ
LSAMQEGDYTYQLTVTDTIGQQATAQVTVIVQPENNKPPQADAGPDKELTLPVDSTTLDGSKSSDDQKII
SYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKEEINKPPIAKITGN
VVITLPTSTAELDGSKSSDDKGIVSYLWTRDEGSPAAGEVLNHSDHHPILFLSNLVEGTYTFHLKVTDAK
GESDTDRTTVEVKPDPRKNNLVEIILDINVSQLTERLKGMFIRQIGVLLGVLDSDIIVQKIQPYTEQSTK
MVFFVQNEPPHQIFKGHEVAAMLKSELRKQKADFLIFRALEVNTVTCQLNCSDHGHCDSFTKRCICDPFW
MENFIKVQLRDGDSNCEWSVLYVIIATFVIVVALGILSWTVICCCKRQKGKPKRKSKYKILDATDQESLE
LKPTSRAGIKQKGLLLSSSLMHSESELDSDDAIFTWPDREKGKLLHGQNGSVPNGQTPLKARSPREEIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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