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Report for CCDS86922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86922.1 Public Homo sapiens 2 TUBA4B 24 110 108 CCDS HistoryNCBI Gene:80086Re-query CCDS DB by CCDS ID:86922.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86922.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000490341.3 ENSP00000487719.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000490341.3Link to Ensembl Protein Viewer:ENSP00000487719.1Re-query CCDS DB by Nucleotide ID:ENST00000490341Re-query CCDS DB by Protein ID:ENSP00000487719
Original member Current member NCBI NM_001355221.1 NP_001342150.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001355221.1Link to Protein Sequence:NP_001342150.1Re-query CCDS DB by Nucleotide ID:NM_001355221Re-query CCDS DB by Protein ID:NP_001342150Link to BLAST:NP_001342150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342150.1 241 Q9H853 241 100% 0 0

Chromosomal Locations for CCDS 86922.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219253408 219253419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219266521 219266566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219270202 219270335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219271166 219271699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCGGCACCAGCAGACAGAGAGACAAGACCCCAGCCAGCCCCTGTCCAGGCAGCATGGCACATACCGCC
AGATCTTCCATCCAGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCTGGGGCCACTA
CACCATTGGGAAGGAGTTCATCGACCTGCTACTGGACCGGATTCGGAAGCTGGCTGACCAGTGCACAGGA
CTTCAGGGCTTCCTGGTGTTCCACAGCCTTGGTCGGGGCACTGGCTCTGACGTCACCTCATTCCTGATGG
AGTGGCTTTCTGTTAACTATGGCAAGAAATCCAAGCTGGGATTCTCCATCTACCCAGCCCCCCAGGTGTC
TACAGCCATGGTCCAGCCCTACAACTCTATCCTGACCACCCACACCACCCTGGAGCACTCAGACTGTGCC
TTCATGGTGGACAACAAAGCAATCTATGACATCTGCCACTGCAACCTAGACATCGAGCGCCCAACCTACA
CCAACCTCAATCGCCTCATTAGCCAAATTGTCTCCTCCATCACAGCTTCTCTGCGCTTTGACGGGGCCCT
CAATGTGGACCTGACAGAGTTCCAGACCAACCTGGTGTCCTACCTCACATCCACTTCCCCCTGGCCACCT
ATGCACCAGTCATCTCTGCAGAAAAGGTATACCACGAGCAGCTGTTGGTGGCAGAGATTACCAATGCCTG
CTTTGAGCCTGCCAACCAGATGGTGA

Translation (241 aa):
MRHQQTERQDPSQPLSRQHGTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTG
LQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCA
FMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPP
MHQSSLQKRYTTSSCWWQRLPMPALSLPTRW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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