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Report for CCDS3324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3324.1 Public Homo sapiens 3 PIGZ 24 110 108 CCDS HistoryNCBI Gene:80235Re-query CCDS DB by CCDS ID:3324.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412723.6 ENSP00000413405.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412723.6Link to Ensembl Protein Viewer:ENSP00000413405.1Re-query CCDS DB by Nucleotide ID:ENST00000412723Re-query CCDS DB by Protein ID:ENSP00000413405
Original member Current member NCBI NM_025163.4 NP_079439.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025163.4Link to Protein Sequence:NP_079439.2Re-query CCDS DB by Nucleotide ID:NM_025163Re-query CCDS DB by Protein ID:NP_079439Link to BLAST:NP_079439.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079439.2 579 Q86VD9 579 100% 0 0

Chromosomal Locations for CCDS 3324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 196947157 196948685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196951821 196952031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGCAGATCTGTGGATCCAGCGTAGCATCTGTAGCAGCTGGGACATCATTCCAGGTTTTGGGCCCGGTGT
GTTGGCAACAACTGGATCTGAAGATGGCAGTCAGGGTGCTTTGGGGTGGTCTCAGCCTGCTCCGAGTGCT
GTGGTGTCTCCTTCCGCAGACGGGCTATGTGCACCCAGATGAGTTCTTCCAGTCCCCTGAGGTGATGGCA
GAGGACATCCTGGGCGTTCAGGCCGCGCGGCCCTGGGAGTTTTACCCCAGCAGCTCCTGCCGCTCGGTGC
TCTTCCCCCTGCTGATCTCTGGTTCCACCTTCTGGCTGCTCAGGCTCTGGGAGGAGCTGGGGCCGTGGCC
TGGCCTGGTGAGCGGCTATGCGCTGCTGGTGGGGCCTCGACTCCTCCTCACTGCCCTTTCCTTTGCTCTG
GACGGGGCCGTGTACCACCTGGCCCCGCCGATGGGGGCGGATCGCTGGAACGCCCTGGCCCTGCTGTCTG
GTTCCTACGTCACCCTGGTCTTCTACACAAGGACCTTCTCCAACACCATTGAGGGACTCCTCTTCACGTG
GCTGCTGGTGCTGGTATCCTCCCATGTAACGTGGGGCCCTACACGCAAGGAGCCGGCGCCGGGTCCACGG
TGGCGCAGCTGGCTTCTTGGAGGCATTGTGGCTGCTGGCTTCTTCAACCGGCCCACCTTTCTGGCCTTTG
CTGTGGTCCCCCTCTACCTCTGGGGCACTCGTGGAGCCACAAACCCTGGTTTGAAGTCTCTGACCCGGGA
GGCCCTGGTGCTGCTCCCTGGGGCAGCCCTCACAGCAGCGGTGTTTGTGGCCACGGACAGCTGGTATTTC
TCCAGCCCCGCTACATCCAGGAACCTTGTCCTGACACCTGTCAACTTCTTGCACTACAACCTGAATCCCC
AAAACCTGGCGAGACATGGCACGCACGCGCGGCTCACTCACCTGGCAGTCAACGGCTTCCTGCTCTTCGG
GGTGCTGCATGCCCAGGCCCTGCAGGCTGCGTGGCAACGGCTGCAAGTCGGCCTCCAGGCCTCTGCACAA
ATGGGCCTCCTGAGGGCACTGGGTGCCCGGAGCCTGCTGTCCAGCCCCAGGTCCTATCTCCTTCTCCTCT
ACTTCATGCCTCTGGCCCTGCTATCTGCCTTTAGCCACCAGGAGGCTCGGTTCCTGATTCCCCTCCTGGT
CCCCCTGGTCCTGCTTTGTAGTCCACAGACGCAGCCTGTGCCTTGGAAGGGCACTGTGGTCCTCTTCAAC
GCCCTCGGTGCCCTCCTCTTCGGCTGCCTGCATCAGGGGGGCCTGGTGCCTGGCCTGGAGTACCTGGAGC
AGGTGGTCCATGCCCCTGTGCTCCCAAGCACACCCACCCACTACACACTCCTCTTCACTCACACCTACAT
GCCCCCCCGGCACCTCCTACACCTCCCAGGCCTGGGGGCACCAGTGGAGGTGGTGGACATGGGGGGGACT
GAGGACTGGGCCCTGTGCCAAACCCTGAAAAGCTTCACCAGACAACCAGCCTGCCAAGTGGCTGGTGGGC
CATGGCTCTGCCGCCTCTTTGTGGTAACCCCTGGCACCACCAGGCGTGCCGTGGAGAAGTGCAGCTTCCC
CTTCAAGAATGAAACACTTTTATTTCCCCATCTGACCCTGGAGGATCCACCAGCCCTGTCCTCCTTGCTG
AGTGGGGCTTGGAGGGACCACCTCAGTCTTCACATTGTGGAGCTGGGGGAAGAAACCTGA

Translation (579 aa):
MQICGSSVASVAAGTSFQVLGPVCWQQLDLKMAVRVLWGGLSLLRVLWCLLPQTGYVHPDEFFQSPEVMA
EDILGVQAARPWEFYPSSSCRSVLFPLLISGSTFWLLRLWEELGPWPGLVSGYALLVGPRLLLTALSFAL
DGAVYHLAPPMGADRWNALALLSGSYVTLVFYTRTFSNTIEGLLFTWLLVLVSSHVTWGPTRKEPAPGPR
WRSWLLGGIVAAGFFNRPTFLAFAVVPLYLWGTRGATNPGLKSLTREALVLLPGAALTAAVFVATDSWYF
SSPATSRNLVLTPVNFLHYNLNPQNLARHGTHARLTHLAVNGFLLFGVLHAQALQAAWQRLQVGLQASAQ
MGLLRALGARSLLSSPRSYLLLLYFMPLALLSAFSHQEARFLIPLLVPLVLLCSPQTQPVPWKGTVVLFN
ALGALLFGCLHQGGLVPGLEYLEQVVHAPVLPSTPTHYTLLFTHTYMPPRHLLHLPGLGAPVEVVDMGGT
EDWALCQTLKSFTRQPACQVAGGPWLCRLFVVTPGTTRRAVEKCSFPFKNETLLFPHLTLEDPPALSSLL
SGAWRDHLSLHIVELGEET


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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