NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6201.1 Public Homo sapiens 8 PREX2 24 110 108 CCDS HistoryNCBI Gene:80243Re-query CCDS DB by CCDS ID:6201.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288368.5 ENSP00000288368.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288368.5Link to Ensembl Protein Viewer:ENSP00000288368.4Re-query CCDS DB by Nucleotide ID:ENST00000288368Re-query CCDS DB by Protein ID:ENSP00000288368
Original member Current member NCBI NM_024870.4 NP_079146.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024870.4Link to Protein Sequence:NP_079146.2Re-query CCDS DB by Nucleotide ID:NM_024870Re-query CCDS DB by Protein ID:NP_079146Link to BLAST:NP_079146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079146.2 1606 Q70Z35-1 1606 100% 0 0

Chromosomal Locations for CCDS 6201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 67952395 67952535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68017846 68017917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68019549 68019671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68022036 68022140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68027222 68027323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68030497 68030658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68038159 68038292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68044487 68044590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68053097 68053246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68055830 68055974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68060679 68060779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68069033 68069136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68069835 68069884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68072495 68072570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68077397 68077469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68080443 68080585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68080746 68080838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68083240 68083388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68087724 68087809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68090579 68090715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68093605 68093722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68097017 68097201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68099682 68099843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68108109 68108331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68109416 68109623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68115753 68115932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68118550 68118644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68119432 68119514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68120196 68120286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68120921 68121049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68127378 68127419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68134059 68134276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68138415 68138517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68146209 68146352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68157322 68157436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68191722 68191788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68192335 68192525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68217616 68217718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68224559 68224626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68231333 68231378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4821 nt):
ATGAGCGAGGACAGCCGCGGAGACAGCCGCGCCGAGAGCGCCAAGGACCTGGAGAAGCAGCTTCGCCTGC
GCGTGTGCGTGCTCAGCGAGCTCCAGAAGACCGAGCGGGACTATGTGGGCACGCTGGAGTTCCTGGTGTC
GGCATTCTTACACAGAATGAACCAGTGTGCAGCATCAAAAGTTGACAAAAATGTGACAGAAGAAACAGTG
AAGATGTTGTTCTCAAACATTGAAGACATCCTTGCAGTACATAAAGAATTCTTAAAAGTCGTGGAAGAAT
GCTTACACCCCGAACCTAATGCTCAACAAGAAGTGGGAACCTGCTTTCTTCACTTTAAAGACAAGTTTCG
TATCTATGATGAATATTGTAGTAACCATGAGAAGGCACAAAAATTACTTCTTGAACTCAACAAAATAAGA
ACAATCCGGACATTTCTTTTGAACTGCATGCTGCTTGGAGGACGGAAGAACACAGATGTTCCCTTGGAAG
GATATTTAGTAACACCAATACAAAGAATATGCAAGTACCCTCTTATTTTGAAGGAGTTGCTGAAGCGGAC
TCCACGGAAACACAGTGACTATGCAGCAGTGATGGAAGCCCTCCAAGCCATGAAAGCTGTCTGTTCCAAC
ATAAACGAGGCCAAGAGACAGATGGAGAAGTTAGAAGTTTTAGAGGAATGGCAGTCTCACATTGAAGGCT
GGGAGGGGTCCAACATCACTGACACCTGCACTGAAATGCTAATGTGTGGAGTCTTACTGAAAATTTCTTC
TGGAAATATTCAAGAACGGGTGTTTTTTCTTTTCGATAATCTTTTGGTGTACTGCAAAAGAAAACACAGA
CGGTTGAAGAACAGCAAGGCATCTACAGATGGACATCGGTACCTTTTTCGTGGCCGGATCAACACGGAGG
TGATGGAAGTGGAGAATGTGGATGATGGCACCGCTGATTTCCATAGCAGTGGACACATTGTTGTTAATGG
ATGGAAGATACATAACACAGCAAAAAATAAATGGTTTGTTTGTATGGCAAAAACACCTGAAGAGAAGCAT
GAATGGTTTGAAGCTATTTTGAAAGAAAGAGAACGGCGGAAAGGTTTAAAATTAGGAATGGAGCAAGATA
CCTGGGTCATGATCTCTGAACAGGGTGAGAAACTTTATAAAATGATGTGCAGACAAGGAAATCTGATCAA
AGACCGAAAGAGAAAACTGACTACGTTCCCTAAATGCTTTCTTGGAAGCGAATTTGTGTCATGGCTGTTG
GAAATTGGAGAGATTCACAGGCCTGAGGAAGGCGTGCACTTGGGACAAGCATTATTAGAAAATGGAATCA
TTCACCATGTTACTGATAAACATCAATTCAAACCAGAACAGATGTTATATAGATTTCGCTATGATGATGG
AACATTTTATCCAAGAAATGAGATGCAGGACGTGATTTCAAAGGGTGTAAGATTATATTGTCGTCTTCAT
AGCCTTTTTACTCCAGTGATAAGAGATAAAGATTACCATTTAAGGACCTACAAATCTGTGGTCATGGCCA
ACAAACTGATAGACTGGTTAATTGCACAGGGAGATTGCCGCACCAGAGAAGAGGCAATGATATTTGGCGT
TGGACTCTGTGACAATGGATTTATGCACCATGTCCTTGAAAAAAGCGAATTCAAAGATGAACCCCTACTT
TTCCGTTTTTTTTCGGATGAGGAAATGGAGGGATCAAATATGAAACATCGACTTATGAAACATGACTTAA
AAGTTGTGGAAAATGTTATAGCTAAGTCATTATTGATTAAATCCAATGAAGGCAGCTATGGCTTTGGATT
AGAAGACAAAAATAAAGTTCCAATAATAAAGTTGGTAGAAAAGGGATCTAATGCTGAGATGGCTGGCATG
GAAGTCGGGAAAAAGATTTTTGCTATTAATGGTGACCTAGTTTTTATGAGACCTTTCAATGAAGTGGATT
GCTTCCTGAAATCGTGTTTAAACAGCAGAAAACCTCTAAGAGTTCTTGTGAGCACAAAGCCAAGAGAGAC
AGTGAAAATTCCAGATTCAGCTGATGGACTTGGCTTCCAGATCCGGGGATTTGGCCCTTCTGTTGTGCAT
GCTGTAGGAAGAGGAACTGTGGCTGCAGCAGCTGGTCTTCACCCTGGACAGTGCATTATCAAGGTGAATG
GAATCAATGTCAGCAAAGAGACACATGCCAGTGTCATTGCACACGTTACAGCCTGCAGGAAGTACAGGCG
GCCAACGAAGCAAGATTCCATACAATGGGTTTATAATAGCATTGAGAGTGCTCAAGAAGACCTTCAAAAA
TCTCACTCCAAGCCCCCTGGAGATGAAGCAGGGGATGCTTTTGACTGTAAAGTAGAAGAGGTTATTGACA
AATTCAACACTATGGCCATCATTGATGGGAAGAAGGAGCATGTGAGTCTGACAGTGGACAATGTCCACCT
GGAATATGGTGTCGTGTATGAGTACGACAGCACAGCTGGCATCAAGTGCAATGTGGTGGAAAAGATGATT
GAGCCCAAAGGTTTCTTCAGCTTAACTGCCAAGATTCTTGAAGCCCTGGCTAAAAGTGATGAGCATTTTG
TACAAAACTGTACCAGCCTAAATTCTCTAAATGAAGTGATTCCTACTGACCTTCAGAGTAAATTCAGTGC
CCTTTGCAGTGAAAGAATTGAACACCTATGTCAGAGAATATCCAGTTATAAAAAGTTTTCTCGTGTACTG
AAGAATAGGGCCTGGCCTACTTTTAAACAGGCCAAATCTAAAATCTCCCCACTGCACAGCAGTGATTTCT
GCCCTACCAACTGCCATGTCAATGTGATGGAAGTTTCTTATCCCAAAACATCAACCTCTTTGGGAAGTGC
ATTTGGTGTTCAGTTGGATAGCAGGAAGCATAATTCTCATGATAAAGAAAACAAATCTTCGGAGCAAGGG
AAACTGAGCCCTATGGTGTACATTCAGCACACCATCACAACCATGGCGGCCCCTTCAGGTCTGTCTCTGG
GACAGCAGGATGGCCATGGTCTCAGGTATCTGCTAAAAGAAGAAGACTTAGAAACCCAAGACATCTATCA
GAAACTGCTGGGCAAACTTCAGACTGCACTGAAAGAGGTGGAGATGTGTGTTTGTCAAATAGATGACCTT
CTGTCTTCAATAACATATTCTCCTAAATTAGAACGTAAGACATCAGAGGGCATAATACCAACAGACAGTG
ACAATGAGAAGGGAGAAAGAAACAGCAAACGGGTATGTTTTAATGTAGCAGGAGATGAACAGGAAGATTC
TGGTCATGACACCATCAGCAACAGAGACTCTTACAGTGACTGCAACAGCAATAGGAATTCCATCGCCTCC
TTCACCAGCATCTGCAGCAGCCAGTGCAGCTCGTATTTCCACAGTGATGAAATGGACTCAGGTGATGAAC
TTCCCTTAAGTGTTCGCATATCTCATGATAAACAGGACAAGATACATAGTTGCCTTGAGCATCTTTTCAG
CCAGGTGGATTCAATTACCAATCTCCTAAAAGGGCAGGCTGTTGTGAGGGCCTTTGACCAAACCAAGTAT
CTCACTCCAGGCCGAGGATTGCAAGAATTTCAACAGGAAATGGAACCAAAGCTGAGTTGTCCAAAAAGGC
TACGGCTTCATATCAAGCAAGATCCTTGGAATCTTCCCAGCAGCGTCCGGACTCTTGCTCAGAACATCAG
GAAATTTGTTGAAGAGGTAAAGTGTAGGCTACTCCTGGCTCTTCTTGAATATTCAGATAGTGAGACACAG
CTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGG
CGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCAGGAGGTG
GCTGGACCAGATAGCGAATGCAGGTGTTCTTTTTCACTTTCAGTCACTTCTGTCACCAAACTTGACAGAT
GAACAAGCCATGTTAGAAGATACACTGGTTGCACTATTTGATTTGGAAAAGGTTTCCTTTTACTTTAAAC
CATCAGAAGAGGAACCTCTGGTTGCAAATGTTCCTCTTACATATCAAGCAGAAGGAAGTCGGCAAGCTCT
GAAAGTTTACTTCTACATTGATAGTTATCATTTTGAACAACTTCCTCAACGGCTGAAAAATGGAGGAGGG
TTTAAAATTCATCCTGTTCTTTTTGCACAAGCACTAGAGAGCATGGAAGGATATTATTACAGAGACAATG
TTTCTGTGGAAGAATTTCAAGCTCAGATAAATGCAGCCTCACTGGAAAAGGTCAAACAGTACAACCAGAA
GCTCAGGGCATTCTACTTGGACAAGTCAAATTCACCACCAAACTCCACATCCAAAGCTGCCTATGTAGAT
AAGCTAATGAGGCCTCTCAACGCTTTGGATGAACTTTACCGACTGGTAGCCTCGTTTATCAGATCCAAGC
GCACAGCTGCCTGTGCAAACACAGCTTGCAGTGCTTCTGGGGTTGGACTGCTGTCAGTTTCCTCGGAGCT
GTGCAACAGGCTGGGCGCCTGCCACATCATCATGTGCAGCAGCGGTGTGCATCGGTGCACCCTGAGCGTG
ACGCTGGAGCAAGCCATCATTCTGGCCAGAAGCCACGGACTGCCACCTCGTTACATCATGCAGGCTACAG
ATGTGATGCGGAAGCAGGGAGCAAGAGTTCAGAACACAGCGAAGAATTTGGGAGTCAGAGACCGGACTCC
ACAGTCTGCACCAAGGCTGTACAAGCTGTGCGAGCCACCTCCCCCAGCTGGAGAAGAATGA

Translation (1606 aa):
MSEDSRGDSRAESAKDLEKQLRLRVCVLSELQKTERDYVGTLEFLVSAFLHRMNQCAASKVDKNVTEETV
KMLFSNIEDILAVHKEFLKVVEECLHPEPNAQQEVGTCFLHFKDKFRIYDEYCSNHEKAQKLLLELNKIR
TIRTFLLNCMLLGGRKNTDVPLEGYLVTPIQRICKYPLILKELLKRTPRKHSDYAAVMEALQAMKAVCSN
INEAKRQMEKLEVLEEWQSHIEGWEGSNITDTCTEMLMCGVLLKISSGNIQERVFFLFDNLLVYCKRKHR
RLKNSKASTDGHRYLFRGRINTEVMEVENVDDGTADFHSSGHIVVNGWKIHNTAKNKWFVCMAKTPEEKH
EWFEAILKERERRKGLKLGMEQDTWVMISEQGEKLYKMMCRQGNLIKDRKRKLTTFPKCFLGSEFVSWLL
EIGEIHRPEEGVHLGQALLENGIIHHVTDKHQFKPEQMLYRFRYDDGTFYPRNEMQDVISKGVRLYCRLH
SLFTPVIRDKDYHLRTYKSVVMANKLIDWLIAQGDCRTREEAMIFGVGLCDNGFMHHVLEKSEFKDEPLL
FRFFSDEEMEGSNMKHRLMKHDLKVVENVIAKSLLIKSNEGSYGFGLEDKNKVPIIKLVEKGSNAEMAGM
EVGKKIFAINGDLVFMRPFNEVDCFLKSCLNSRKPLRVLVSTKPRETVKIPDSADGLGFQIRGFGPSVVH
AVGRGTVAAAAGLHPGQCIIKVNGINVSKETHASVIAHVTACRKYRRPTKQDSIQWVYNSIESAQEDLQK
SHSKPPGDEAGDAFDCKVEEVIDKFNTMAIIDGKKEHVSLTVDNVHLEYGVVYEYDSTAGIKCNVVEKMI
EPKGFFSLTAKILEALAKSDEHFVQNCTSLNSLNEVIPTDLQSKFSALCSERIEHLCQRISSYKKFSRVL
KNRAWPTFKQAKSKISPLHSSDFCPTNCHVNVMEVSYPKTSTSLGSAFGVQLDSRKHNSHDKENKSSEQG
KLSPMVYIQHTITTMAAPSGLSLGQQDGHGLRYLLKEEDLETQDIYQKLLGKLQTALKEVEMCVCQIDDL
LSSITYSPKLERKTSEGIIPTDSDNEKGERNSKRVCFNVAGDEQEDSGHDTISNRDSYSDCNSNRNSIAS
FTSICSSQCSSYFHSDEMDSGDELPLSVRISHDKQDKIHSCLEHLFSQVDSITNLLKGQAVVRAFDQTKY
LTPGRGLQEFQQEMEPKLSCPKRLRLHIKQDPWNLPSSVRTLAQNIRKFVEEVKCRLLLALLEYSDSETQ
LRRDMVFCQTLVATVCAFSEQLMAALNQMFDNSKENEMETWEASRRWLDQIANAGVLFHFQSLLSPNLTD
EQAMLEDTLVALFDLEKVSFYFKPSEEEPLVANVPLTYQAEGSRQALKVYFYIDSYHFEQLPQRLKNGGG
FKIHPVLFAQALESMEGYYYRDNVSVEEFQAQINAASLEKVKQYNQKLRAFYLDKSNSPPNSTSKAAYVD
KLMRPLNALDELYRLVASFIRSKRTAACANTACSASGVGLLSVSSELCNRLGACHIIMCSSGVHRCTLSV
TLEQAIILARSHGLPPRYIMQATDVMRKQGARVQNTAKNLGVRDRTPQSAPRLYKLCEPPPPAGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH