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Report for CCDS2037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2037.1 Public Homo sapiens 2 TSGA10 24 110 108 CCDS HistoryNCBI Gene:80705Re-query CCDS DB by CCDS ID:2037.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2037.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355053.8 ENSP00000347161.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355053.8Link to Ensembl Protein Viewer:ENSP00000347161.4Re-query CCDS DB by Nucleotide ID:ENST00000355053Re-query CCDS DB by Protein ID:ENSP00000347161
Original member Current member EBI ENST00000393483.8 ENSP00000377123.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393483.8Link to Ensembl Protein Viewer:ENSP00000377123.3Re-query CCDS DB by Nucleotide ID:ENST00000393483Re-query CCDS DB by Protein ID:ENSP00000377123
Original member Current member EBI ENST00000410001.5 ENSP00000386956.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410001.5Link to Ensembl Protein Viewer:ENSP00000386956.1Re-query CCDS DB by Nucleotide ID:ENST00000410001Re-query CCDS DB by Protein ID:ENSP00000386956
Original member Current member NCBI NM_001349012.1 NP_001335941.1 Accepted alive Link to Nucleotide Sequence:NM_001349012.1Link to Protein Sequence:NP_001335941.1Re-query CCDS DB by Nucleotide ID:NM_001349012Re-query CCDS DB by Protein ID:NP_001335941Link to BLAST:NP_001335941.1
Original member Current member NCBI NM_025244.4 NP_079520.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025244.4Link to Protein Sequence:NP_079520.1Re-query CCDS DB by Nucleotide ID:NM_025244Re-query CCDS DB by Protein ID:NP_079520Link to BLAST:NP_079520.1
Original member Current member NCBI NM_182911.4 NP_878915.2 Accepted alive Link to Nucleotide Sequence:NM_182911.4Link to Protein Sequence:NP_878915.2Re-query CCDS DB by Nucleotide ID:NM_182911Re-query CCDS DB by Protein ID:NP_878915Link to BLAST:NP_878915.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335941.1 698 Q9BZW7-1 698 100% 0 0
NP_079520.1 698 Q9BZW7-1 698 100% 0 0
NP_878915.2 698 Q9BZW7-1 698 100% 0 0

Chromosomal Locations for CCDS 2037.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 98998197 98998221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99018200 99018349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99018536 99018640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99020280 99020482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99035230 99035439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99064939 99065124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99068888 99068998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99071706 99071874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99073018 99073073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99078659 99078813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99081282 99081397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99103967 99104118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99105359 99105436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99105527 99105697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99108833 99108991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99109389 99109439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGATGCGAAGTAGGTCTAAAAGTCCAAGACGCCCATCACCAACTGCCCGGGGTGCAAACTGTGATGTAG
AACTTTTGAAGACAACAACAAGAGATCGTGAAGAACTTAAATGCATGCTGGAAAAATATGAGCGCCATTT
GGCAGAAATTCAGGGTAATGTCAAGGTTCTTAAATCTGAGAGAGACAAGATCTTCCTTCTTTATGAACAG
GCACAGGAAGAAATTACCCGACTTCGACGAGAAATGATGAAAAGCTGTAAGAGTCCTAAATCAACAACGG
CACATGCTATTCTCCGGCGAGTGGAGACTGAAAGAGATGTAGCCTTTACTGATTTACGAAGAATGACCAC
AGAACGAGATAGTCTAAGGGAGAGGCTAAAGATTGCTCAAGAGACAGCATTTAATGAGAAGGCTCACCTG
GAACAAAGGATAGAGGAGCTGGAGTGTACAGTTCATAATCTTGATGATGAACGTATGGAGCAAATGTCAA
ATATGACTTTGATGAAGGAAACCATAAGCACTGTGGAAAAAGAAATGAAATCACTAGCAAGAAAGGCAAT
GGATACCGAAAGTGAACTTGGCAGACAAAAAGCAGAGAATAATTCTTTGAGACTTTTGTATGAAAACACA
GAAAAAGATCTTTCTGATACTCAGCGACACCTTGCTAAGAAAAAATATGAGCTACAGCTTACTCAGGAGA
AAATTATGTGCTTGGATGAAAAAATTGATAACTTTACAAGGCAAAATATTGCACAGCGAGAAGAAATCAG
CATTCTTGGTGGAACCCTCAATGATCTGGCTAAAGAAAAGGAATGCCTGCAAGCATGTTTGGATAAAAAA
TCTGAGAATATTGCATCCCTTGGAGAGAGTTTGGCAATGAAAGAAAAGACCATTTCAGGCATGAAGAATA
TCATTGCTGAGATGGAACAGGCATCAAGACAGTGTACTGAGGCCCTAATTGTGTGTGAACAAGACGTTTC
CAGAATGCGTCGGCAATTGGATGAGACAAATGATGAGCTGGCCCAGATCGCCAGGGAAAGAGATATCTTG
GCTCATGACAATGACAATCTCCAGGAACAGTTTGCTAAAGCTAAACAAGAAAACCAGGCACTGTCCAAAA
AATTGAATGACACTCATAATGAACTTAATGACATAAAACAGAAGGTTCAAGATACTAATTTGGAGGTTAA
CAAGCTGAAGAATATATTAAAGTCTGAAGAATCTGAGAACCGGCAAATGATGGAACAACTTCGAAAAGCC
AATGAAGATGCTGAAAACTGGGAAAATAAAGCCCGTCAATCAGAGGCAGATAACAATACCCTCAAACTGG
AACTTATCACTGCTGAGGCAGAGGGTAACAGATTAAAAGAAAAAGTAGATTCCCTCAACAGAGAGGTTGA
GCAACACTTAAATGCAGAAAGGTCTTACAAGTCCCAGATTTCTACCTTACATAAATCTGTTGTAAAAATG
GAAGAGGAGCTTCAGAAGGTTCAGTTTGAAAAAGTGTCCGCTCTTGCAGATTTGTCTTCTACTAGGGAAC
TCTGTATTAAACTTGACTCAAGCAAAGAACTTCTTAATCGACAGCTGGTTGCTAAAGATCAAGAAATAGA
AATGAGGGAGAATGAGTTAGATTCTGCTCATTCTGAAATTGAACTCCTGAGGAGTCAGATGGCAAATGAG
AGAATCTCCATGCAGAATCTAGAAGCTTTGCTGGTGGCCAATCGAGACAAAGAATATCAGTCTCAGATAG
CACTTCAAGAAAAAGAATCTGAAATTCAGCTTCTTAAAGAACACCTTTGTTTGGCAGAAAATAAAATGGC
CATCCAGAGTAGAGATGTGGCCCAGTTCAGAAATGTTGTCACACAATTGGAAGCTGATTTAGACATTACC
AAAAGACAACTAGGAACAGAGCGCTTTGAAAGGGAGAGGGCCGTACAAGAACTTCGCCGCCAAAATTATT
CAAGTAATGCTTATCATATGAGTTCTACAATGAAGCCAAATACAAAATGTCATTCACCAGAACGTGCTCA
CCATCGATCTCCTGACCGAGGCCTAGATCGATCATTAGAAGAGAATCTTTGCTACAGAGATTTCTGA

Translation (698 aa):
MMRSRSKSPRRPSPTARGANCDVELLKTTTRDREELKCMLEKYERHLAEIQGNVKVLKSERDKIFLLYEQ
AQEEITRLRREMMKSCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHL
EQRIEELECTVHNLDDERMEQMSNMTLMKETISTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENT
EKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGGTLNDLAKEKECLQACLDKK
SENIASLGESLAMKEKTISGMKNIIAEMEQASRQCTEALIVCEQDVSRMRRQLDETNDELAQIARERDIL
AHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKA
NEDAENWENKARQSEADNNTLKLELITAEAEGNRLKEKVDSLNREVEQHLNAERSYKSQISTLHKSVVKM
EEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMRENELDSAHSEIELLRSQMANE
RISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDIT
KRQLGTERFERERAVQELRRQNYSSNAYHMSSTMKPNTKCHSPERAHHRSPDRGLDRSLEENLCYRDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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