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Report for CCDS77454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77454.1 Public Homo sapiens 2 RABL2A 24 110 108 CCDS HistoryNCBI Gene:11159Re-query CCDS DB by CCDS ID:77454.1Re-query CCDS DB by GeneID:11159See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77454.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393165.7 ENSP00000376870.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393165.7Link to Ensembl Protein Viewer:ENSP00000376870.3Re-query CCDS DB by Nucleotide ID:ENST00000393165Re-query CCDS DB by Protein ID:ENSP00000376870
Original member Current member EBI ENST00000683472.1 ENSP00000507832.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683472.1Link to Ensembl Protein Viewer:ENSP00000507832.1Re-query CCDS DB by Nucleotide ID:ENST00000683472Re-query CCDS DB by Protein ID:ENSP00000507832
Original member Current member NCBI NM_001306158.2 NP_001293087.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001306158.2Link to Protein Sequence:NP_001293087.1Re-query CCDS DB by Nucleotide ID:NM_001306158Re-query CCDS DB by Protein ID:NP_001293087Link to BLAST:NP_001293087.1
Original member Current member NCBI NM_001306159.2 NP_001293088.1 Accepted alive Link to Nucleotide Sequence:NM_001306159.2Link to Protein Sequence:NP_001293088.1Re-query CCDS DB by Nucleotide ID:NM_001306159Re-query CCDS DB by Protein ID:NP_001293088Link to BLAST:NP_001293088.1
Original member Current member NCBI NM_001354412.2 NP_001341341.1 Accepted alive Link to Nucleotide Sequence:NM_001354412.2Link to Protein Sequence:NP_001341341.1Re-query CCDS DB by Nucleotide ID:NM_001354412Re-query CCDS DB by Protein ID:NP_001341341Link to BLAST:NP_001341341.1
Original member Current member NCBI NM_001354413.2 NP_001341342.1 Accepted alive Link to Nucleotide Sequence:NM_001354413.2Link to Protein Sequence:NP_001341342.1Re-query CCDS DB by Nucleotide ID:NM_001354413Re-query CCDS DB by Protein ID:NP_001341342Link to BLAST:NP_001341342.1
Original member Current member NCBI NM_001354414.2 NP_001341343.1 Accepted alive Link to Nucleotide Sequence:NM_001354414.2Link to Protein Sequence:NP_001341343.1Re-query CCDS DB by Nucleotide ID:NM_001354414Re-query CCDS DB by Protein ID:NP_001341343Link to BLAST:NP_001341343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293087.1 229 Q9UBK7-2 229 100% 0 0
NP_001293088.1 229 Q9UBK7-2 229 100% 0 0
NP_001341341.1 229 Q9UBK7-2 229 100% 0 0
NP_001341342.1 229 Q9UBK7-2 229 100% 0 0
NP_001341343.1 229 Q9UBK7-2 229 100% 0 0

Chromosomal Locations for CCDS 77454.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113628607 113628713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113632915 113632944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113634153 113634232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113635051 113635130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113640894 113641005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113641353 113641450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113641781 113641864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113642031 113642129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCAGAAGACAAAACCAAACCGAGTGAGTTGGACCAAGGGAAGTATGATGCTGATGACAACGTGAAGA
TCATCTGCCTGGGAGACAGCGCAGTGGGCAAATCCAAACTCATGGAGAGATTTCTCATGGATGGCTTTCA
GCCACAGCAGCTGTCCACGTACGCCCTGACCCTGTACAAGCACACAGCCACGGTAGATGGCAAGACCATC
CTTGTGGACTTTTGGGACACGGCAGGCCAGGAGCGGTTCCAGAGCATGCATGCCTCCTACTACCACAAGG
CCCATGCCTGCATCATGGTGTTTGATATACAGAGGAAAGTCACCTATAGGAACCTGAGCACCTGGTATAC
AGAGCTTCGGGAGTTCAGGCCAGAGATCCCATGCATCGTGGTGGCCAATAAAATTGATGCAGACATAAAC
GTGACCCAAAAAAGCTTCAATTTTGCCAAGAAGTTCTCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATG
GTACCAATGTTGTGAAGCTCTTCAATGATGCAATTCGATTAGCTGTGTCTTACAAACAGAACTCCCAGGA
CTTCATGGATGAGATTTTTCAGGAGCTCGAGAACTTCAGCTTGGAGCAGGAAGAGGAGGACGTGCCAGAC
CAGGAACAGAGCAGCAGCATCGAGACCCCATCAGAGGAGGTGGCCTCTCCCCACAGCTGA

Translation (229 aa):
MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTI
LVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFRPEIPCIVVANKIDADIN
VTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPD
QEQSSSIETPSEEVASPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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