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Report for CCDS82515.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
82515.1 |
Public |
Homo sapiens |
2 |
THSD7B |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:80731](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:82515.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Inferred exon combination |
Sequence IDs included in CCDS 82515.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409968.6 |
ENSP00000387145.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409968.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000387145.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409968](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000387145](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001316349.2 |
NP_001303278.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001316349.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001303278.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001316349](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001303278](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001303278.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001303278.1 |
1606 |
Q9C0I4 |
1606 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 82515.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4821 nt): ATGTTTCCAAAGAGCAACCTAACAGTCACTTGCTGGGTATGGAGGAGCATGAGGAAGCTCTTTCTATTGC TTTCTCTCTTGCTGTCCCATGCAGCTCATTTGGAAGGCAAAAAGGATAATCAGTTCATCTGGAAACCAGG TCCGTGGGGAAGGTGTACAGGAGACTGTGGTCCCGGAGGAGTCCAGAGTCGGGCAGTGTGGTGTTTTCAT GTTGACGGGTGGACAAGTCACCTGTCTAACTGTGGTGAGAGCAACAGGCCTCCAAAGGAAAGAAGTTGTT TCCGAGTTTGTGACTGGCACAGTGACCTCTTTCAGTGGGAGGTTTCTGACTGGCACCACTGTGTGCTTGT TCCTTACGCTCGCGGTGAAGTCAAGCCTCGGACTGCAGAGTGTGTGACGGCTCAGCATGGACTGCAGCAC CGGATGGTGCGCTGCATTCAGAAGCTGAACCGAACTGTGGTTGCAAATGAAATATGCGAACACTTTGCCC TTCAGCCTCCTACAGAACAGGCTTGCCTCATTCCTTGTCCCCGGGATTGTGTAGTATCTGAGTTCTTACC ATGGTCCAACTGTAGCAAGGGATGTGGGAAGAAATTGCAGCATAGAACTCGCGCGGTCATAGCTCCCCCT CTCTTTGGTGGTTTGCAATGTCCAAATCTGACTGAGTCAAGAGCCTGTGATGCTCCCATTTCCTGTCCTC TTGGGGAAGAGGAATATACATTTAGCCTTAAGGTTGGACCATGGAGTAAATGCAGACTGCCTCATCTTAA AGAAATTAATCCAAGCGGAAGAACTGTTCTGGATTTTAACTCTGATTCAAATGAGCGAGTCACCTTTAAA CATCAAAGTTACAAAGCACATCATCATTCGAAGTCTTGGGCAATAGAGATAGGTTATCAAACCCGGCAGG TTTCGTGTACAAGAAGTGATGGACAAAATGCTATGTTAAGCCTTTGCCTTCAAGATTCCTTCCCATTGAC TGTTCAGTCCTGCATCATGCCCAAAGACTGTGAAACCTCCCAGTGGTCCTCCTGGAGCCCCTGCTCCAAG ACATGCCGTTCAGGGAGTCTCTTGCCAGGATTTAGGAGCAGGAGCCGGAACGTGAAGCACATGGCTATTG GAGGTGGAAAGGAGTGTCCTGAACTTCTTGAGAAAGAGGCCTGCATTGTTGAAGGAGAACTTCTGCAGCA ATGTCCCAGGTATTCCTGGAGAACTTCTGAATGGAAAGAATGCCAAGTCTCTCTCCTCCTCGAGCAGCAG GATCCCCACTGGCATGTGACGGGACCCGTGTGTGGCGGTGGGATCCAGACCCGGGAGGTGTACTGTGCCC AGAGCGTACCAGCAGCTGCCGCACTGAGGGCCAAGGAAGTCTCTAGACCTGTGGAAAAGGCATTATGTGT GGGACCCGCCCCGTTGCCCTCTCAGCTCTGCAATATCCCTTGCTCTACGGACTGCATAGTATCTTCCTGG TCAGCCTGGGGCCTGTGCATCCATGAAAACTGTCATGATCCTCAGGGGAAAAAAGGATTTAGAACGAGGC AGCGCCATGTCCTCATGGAATCTACAGGGCCTGCAGGGCATTGCCCTCATTTGGTGGAGTCTGTTCCTTG TGAGGATCCAATGTGCTACCGATGGCTGGCATCAGAAGGGATCTGTTTCCCTGATCATGGAAAATGTGGC CTGGGACATCGTATTCTGAAGGCCGTCTGCCAGAATGACCGCGGAGAAGATGTATCAGGGAGTCTTTGCC CAGTTCCCCCTCCTCCTGAGAGGAAGTCTTGTGAAATTCCCTGCCGAATGGACTGTGTGCTGAGCGAGTG GACGGAGTGGTCATCCTGTTCCCAGTCCTGTTCAAATAAAAACTCAGATGGGAAACAGACCAGGTCAAGA ACTATCCTGGCACTGGCTGGGGAAGGTGGAAAGCCATGTCCCCCTAGTCAGGCTCTCCAAGAGCATCGTT TGTGTAATGACCATTCCTGTATGCAGCTTCACTGGGAGACATCGCCTTGGGGCCCTTGTTCTGAGGACAC ATTGGTAACTGCCCTTAATGCAACCATTGGCTGGAATGGAGAAGCCACGTGTGGTGTAGGCATTCAGACT CGGAGAGTCTTCTGTGTCAAGAGTCACGTGGGACAAGTAATGACCAAAAGATGTCCAGATTCTACTCGAC CTGAAACTGTGCGCCCCTGTTTTCTCCCATGCAAAAAAGACTGTATTGTGACTGCTTTCAGTGAGTGGAC ACCCTGCCCAAGGATGTGCCAAGCAGGAAATGCCACAGTAAAACAGTCTCGATACAGAATCATCATCCAA GAAGCAGCCAATGGAGGCCAGGAATGCCCAGATACCTTATATGAGGAGAGAGAGTGTGAAGATGTTTCCT TGTGTCCTGTATATCGGTGGAAGCCACAGAAATGGAGCCCTTGCATCTTAGTGCCAGAGTCTGTCTGGCA GGGAATAACGGGCAGCAGTGAAGCCTGTGGAAAGGGGTTACAAACAAGAGCTGTCTCATGCATCTCTGAT GACAACCGGTCAGCAGAAATGATGGAATGCCTCAAGCAGACAAACGGCATGCCTCTCCTTGTGCAAGAAT GCACAGTCCCATGTCGAGAAGACTGCACCTTCACTGCTTGGTCCAAGTTTACGCCCTGCTCCACGAACTG TGAAGCCACAAAAAGTAGGCGGCGACAGCTCACAGGGAAAAGCAGAAAGAAGGAGAAATGCCAGGATTCT GACCTTTACCCTCTAGTGGAGACAGAACTATGTCCTTGTGATGAATTTATATCCCAACCTTATGGAAACT GGTCAGATTGCATTCTTCCAGAAGGCAGAAGGGAGCCTCACCGAGGACTGCGGGTACAAGCAGACAGCAA AGAATGTGGAGAAGGCCTGCGCTTTCGAGCAGTAGCCTGTTCTGATAAAAATGGAAGACCTGTTGACCCC TCCTTCTGCAGCAGCTCTGGTTACATTCAAGAAAAATGTGTCATTCCCTGCCCATTTGATTGCAAGTTAA GCGATTGGTCTAGTTGGGGGTCTTGCAGTTCATCTTGTGGAATTGGAGTGAGAATTCGATCCAAATGGCT AAAAGAAAAACCTTACAATGGAGGACGACCATGTCCCAAACTGGATCTCAAGAATCAGGTACATGAGGCA GTCCCATGTTACAGTGAGTGCAATCAGTATTCCTGGGTTGTAGAACACTGGTCTTCATGCAAAATCAACA ATGAGCTGAGGTCCCTGCGCTGTGGAGGAGGAACACAATCTAGGAAAATCAGATGTGTGAATACTGCGGA TGGTGAAGGTGGAGCAGTGGATAGCAACCTGTGCAACCAGGATGAAATTCCCCCAGAAACCCAGTCCTGT TCTCTTATGTGTCCCAATGAGTGTGTCATGTCTGAGTGGGGACTTTGGAGCAAATGCCCACAGTCATGCG ATCCCCACACAATGCAGAGAAGAACTCGCCACCTGCTAAGACCATCACTGAACTCAAGGACTTGTGCTGA AGACTCACAGGTGCAGCCTTGCCTCCTGAATGAAAATTGCTTCCAGTTCCAGTACAATCTAACAGAGTGG AGCACATGCCAGCTGAGTGAAAACGCACCCTGTGGTCAAGGCGTCAGGACCCGCCTGCTAAGCTGTGTGT GCAGTGATGGCAAGCCAGTCAGCATGGACCAATGTGAGCAGCATAATTTGGAGAAGCCCCAGAGAATGAG CATTCCCTGCTTGGTGGAATGCGTGGTCAACTGTCAGCTCTCAGGGTGGACGGCTTGGACAGAGTGTTCA CAGACCTGTGGCCATGGAGGTCGAATGAGCCGGACTCGATTTATCATTATGCCAACCCAAGGAGAAGGAC GGCCATGCCCCACAGAGCTTACCCAGGAGAAAACCTGCCCAGTGACCCCCTGCTACAGCTGGGTCCTTGG CAACTGGTCTGCATGTAAATTGGAGGGTGGAGACTGTGGGGAAGGAGTTCAGATCCGCAGCCTTTCCTGC ATGGTCCACAGTGGTTCAATATCTCATGCAGCTGGACGTGTCGAGGATGCACTGTGTGGAGAAATGCCCT TTCAGGACAGCATCCTGAAGCAGCTGTGTTCTGTGCCTTGCCCAGGAGACTGCCATTTAACAGAATGGTC AGAGTGGAGCACATGTGAATTAACCTGCATTGATGGAAGAAGCTTTGAGACTGTGGGCCGCCAGTCTAGA TCAAGGACTTTTATAATTCAGTCTTTTGAGAACCAAGACAGCTGCCCCCAACAGGTTCTAGAAACACGCC CTTGTACAGGAGGCAAATGTTATCACTACACATGGAAAGCAAGTCTTTGGAACAATAACGAACGAACTGT ATGGTGCCAGCGTTCAGATGGCGTTAATGTCACAGGAGGCTGCTCCCCTCAGGCCCGTCCTGCTGCCATT CGGCAGTGCATTCCAGCCTGCAGAAAACCTTTCTCCTACTGTACACAGGGTGGAGTCTGTGGTTGTGAGA AGGGCTATACAGAGATAATGAAATCAAATGGTTTCCTGGATTACTGCATGAAAGTACCAGGCTCAGAGGA TAAAAAAGCTGATGTGAAAAACCTTTCTGGGAAAAACAGACCTGTGAATTCAAAAATACATGATATTTTT AAAGGATGGTCTCTTCAACCACTTGATCCAGATGGCCGAGTAAAAATTTGGGTTTATGGCGTTTCAGGTG GCGCTTTTCTCATCATGATTTTCCTAATATTTACTTCCTACCTTGTTTGCAAGAAGCCAAAACCACATCA AAGCACACCTCCCCAACAGAAGCCTCTGACCTTAGCCTACGATGGAGACTTAGACATGTAA
Translation (1606 aa): MFPKSNLTVTCWVWRSMRKLFLLLSLLLSHAAHLEGKKDNQFIWKPGPWGRCTGDCGPGGVQSRAVWCFH VDGWTSHLSNCGESNRPPKERSCFRVCDWHSDLFQWEVSDWHHCVLVPYARGEVKPRTAECVTAQHGLQH RMVRCIQKLNRTVVANEICEHFALQPPTEQACLIPCPRDCVVSEFLPWSNCSKGCGKKLQHRTRAVIAPP LFGGLQCPNLTESRACDAPISCPLGEEEYTFSLKVGPWSKCRLPHLKEINPSGRTVLDFNSDSNERVTFK HQSYKAHHHSKSWAIEIGYQTRQVSCTRSDGQNAMLSLCLQDSFPLTVQSCIMPKDCETSQWSSWSPCSK TCRSGSLLPGFRSRSRNVKHMAIGGGKECPELLEKEACIVEGELLQQCPRYSWRTSEWKECQVSLLLEQQ DPHWHVTGPVCGGGIQTREVYCAQSVPAAAALRAKEVSRPVEKALCVGPAPLPSQLCNIPCSTDCIVSSW SAWGLCIHENCHDPQGKKGFRTRQRHVLMESTGPAGHCPHLVESVPCEDPMCYRWLASEGICFPDHGKCG LGHRILKAVCQNDRGEDVSGSLCPVPPPPERKSCEIPCRMDCVLSEWTEWSSCSQSCSNKNSDGKQTRSR TILALAGEGGKPCPPSQALQEHRLCNDHSCMQLHWETSPWGPCSEDTLVTALNATIGWNGEATCGVGIQT RRVFCVKSHVGQVMTKRCPDSTRPETVRPCFLPCKKDCIVTAFSEWTPCPRMCQAGNATVKQSRYRIIIQ EAANGGQECPDTLYEERECEDVSLCPVYRWKPQKWSPCILVPESVWQGITGSSEACGKGLQTRAVSCISD DNRSAEMMECLKQTNGMPLLVQECTVPCREDCTFTAWSKFTPCSTNCEATKSRRRQLTGKSRKKEKCQDS DLYPLVETELCPCDEFISQPYGNWSDCILPEGRREPHRGLRVQADSKECGEGLRFRAVACSDKNGRPVDP SFCSSSGYIQEKCVIPCPFDCKLSDWSSWGSCSSSCGIGVRIRSKWLKEKPYNGGRPCPKLDLKNQVHEA VPCYSECNQYSWVVEHWSSCKINNELRSLRCGGGTQSRKIRCVNTADGEGGAVDSNLCNQDEIPPETQSC SLMCPNECVMSEWGLWSKCPQSCDPHTMQRRTRHLLRPSLNSRTCAEDSQVQPCLLNENCFQFQYNLTEW STCQLSENAPCGQGVRTRLLSCVCSDGKPVSMDQCEQHNLEKPQRMSIPCLVECVVNCQLSGWTAWTECS QTCGHGGRMSRTRFIIMPTQGEGRPCPTELTQEKTCPVTPCYSWVLGNWSACKLEGGDCGEGVQIRSLSC MVHSGSISHAAGRVEDALCGEMPFQDSILKQLCSVPCPGDCHLTEWSEWSTCELTCIDGRSFETVGRQSR SRTFIIQSFENQDSCPQQVLETRPCTGGKCYHYTWKASLWNNNERTVWCQRSDGVNVTGGCSPQARPAAI RQCIPACRKPFSYCTQGGVCGCEKGYTEIMKSNGFLDYCMKVPGSEDKKADVKNLSGKNRPVNSKIHDIF KGWSLQPLDPDGRVKIWVYGVSGGAFLIMIFLIFTSYLVCKKPKPHQSTPPQQKPLTLAYDGDLDM
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