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Report for CCDS9028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9028.1 Public Homo sapiens 12 ALX1 24 110 108 CCDS HistoryNCBI Gene:8092Re-query CCDS DB by CCDS ID:9028.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316824.4 ENSP00000315417.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316824.4Link to Ensembl Protein Viewer:ENSP00000315417.3Re-query CCDS DB by Nucleotide ID:ENST00000316824Re-query CCDS DB by Protein ID:ENSP00000315417
Original member Current member NCBI NM_006982.3 NP_008913.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006982.3Link to Protein Sequence:NP_008913.2Re-query CCDS DB by Nucleotide ID:NM_006982Re-query CCDS DB by Protein ID:NP_008913Link to BLAST:NP_008913.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008913.2 326 Q15699 326 100% 0 0

Chromosomal Locations for CCDS 9028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85280262 85280487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85283572 85283876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85286853 85286981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85301155 85301475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAGTTTCTGAGCGAGAAGTTTGCCCTCAAGAGCCCTCCGAGTAAAAACAGTGACTTTTACATGGGCG
CAGGAGGTCCTCTGGAGCACGTTATGGAGACGCTGGACAATGAGTCCTTTTACAGCAAAGCGTCTGCAGG
CAAATGCGTGCAGGCCTTCGGACCCCTGCCCCGCGCCGAGCATCACGTGCGCTTGGAGAGGACCTCGCCC
TGTCAGGACAGCAGCGTGAACTATGGGATCACTAAAGTAGAAGGACAGCCCCTTCACACCGAACTGAATA
GAGCTATGGACAACTGTAACAGTCTCCGAATGTCTCCCGTGAAAGGGATGCAAGAGAAGGGAGAGCTGGA
TGAACTTGGGGATAAATGTGATAGCAATGTATCCAGCAGTAAGAAACGGAGGCACCGAACCACCTTCACC
AGTTTGCAGCTAGAGGAGCTGGAGAAAGTCTTTCAGAAAACTCATTACCCGGATGTGTATGTCAGAGAAC
AGCTTGCTCTGAGGACAGAGCTCACTGAGGCCAGGGTCCAGGTTTGGTTTCAAAATCGAAGGGCCAAATG
GAGAAAAAGGGAACGTTATGGCCAAATACAACAAGCGAAAAGCCATTTTGCTGCCACCTATGATATATCA
GTTTTGCCAAGGACTGACAGCTACCCACAGATTCAGAACAATTTGTGGGCAGGAAATGCAAGTGGTGGTT
CTGTGGTTACTTCATGCATGTTACCACGTGACACTTCCTCCTGTATGACACCTTATTCTCACTCGCCTCG
GACAGATTCCAGTTACACGGGGTTTTCAAACCACCAGAACCAGTTCAGCCACGTGCCCCTCAACAATTTT
TTCACTGACTCTCTTCTTACTGGGGCAACCAATGGACATGCATTTGAAACAAAGCCAGAGTTTGAAAGGA
GGTCTTCCAGTATCGCAGTTCTTCGAATGAAAGCCAAGGAGCACACCGCCAATATTTCATGGGCCATGTA
A

Translation (326 aa):
MEFLSEKFALKSPPSKNSDFYMGAGGPLEHVMETLDNESFYSKASAGKCVQAFGPLPRAEHHVRLERTSP
CQDSSVNYGITKVEGQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFT
SLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDIS
VLPRTDSYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNF
FTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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