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Report for CCDS29140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29140.1 Public Mus musculus 18 Sil1 23 108 98 CCDS HistoryNCBI Gene:81500Re-query CCDS DB by CCDS ID:29140.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025215.9 ENSMUSP00000025215.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025215.9Link to Ensembl Protein Viewer:ENSMUSP00000025215.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025215Re-query CCDS DB by Protein ID:ENSMUSP00000025215
Original member Current member NCBI NM_001360814.1 NP_001347743.1 Accepted alive Link to Nucleotide Sequence:NM_001360814.1Link to Protein Sequence:NP_001347743.1Re-query CCDS DB by Nucleotide ID:NM_001360814Re-query CCDS DB by Protein ID:NP_001347743Link to BLAST:NP_001347743.1
Original member Current member NCBI NM_030749.2 NP_109674.2 Accepted alive Link to Nucleotide Sequence:NM_030749.2Link to Protein Sequence:NP_109674.2Re-query CCDS DB by Nucleotide ID:NM_030749Re-query CCDS DB by Protein ID:NP_109674Link to BLAST:NP_109674.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347743.1 465 Q9EPK6 465 100% 0 0
NP_109674.2 465 Q9EPK6 465 100% 0 0

Chromosomal Locations for CCDS 29140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35266553 35266909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35269039 35269203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35269614 35269710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35317842 35317963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35325284 35325475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35341098 35341197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35348640 35348760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35418057 35418195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35438267 35438371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCTCCTCAGCACCTGCCTTCAACTAGGATGGCCTCTCCAGGAATGCTGCTGGGGCTGCTGTTGACTT
CCTGTTTAACTCTCTGCCTCAGCTGTCAGAACTCAAATAATTTTGCACTCACCAACCCAGAGAAGAGCAT
CCACCAGGAATCAGATACAAAGGAGACCAGGGAAGAGGAGGAGCTAGACACCGAGATCCTGGAGGTGTTC
CACCCAACTCAAGAGTGGCAGACCCTTCAACCAGGTCAGGCTGTTCCTGCAGGATCCCATGTGCGAATGA
ACCTACAGACTGGAGTAAACGAGGTGAAGCTCCAACAAGAAGACAAATTTCAAAATAATCTGAAAGGATT
TAAAAGAGGCAGAAGGCTGGACATCAACGCCAACACATACACATCTCAGGACCTCAAGAGTGCGCTGGCC
AAATTCAAGGAGGGGACCGAGATGGAGAATTCAAAGGATGAACTGGCGAGACAGGCCACAGTCAAGCAGC
TCTTCCGCCCCATTGAGGAGCTGAAGAAGGAATTTGATGAGCTGAACGTTGTTCTTGAGACTGACATGCA
GATTATGGTTCGGCTGATAAACAAGTTCAACAGCTCCAGCTCCAGCCTAGAAGAGAAGGTTGCTGCGCTC
TTTGATCTTGAGTACTATGTCCATCAGATGGATAACGCACAGGACCTGCTGTCCTTTGGTGGCCTTCAAG
TGGTGATTAATGGGCTCAACAGCACAGAACCCCTGGTGAAGGAGTATGCTGCTTTTGTGCTGGGGGCCGC
CTTTTCCAGCAATCCGAAGGTCCAGGTGGAAGCCATCGAAGGGGGAGCCCTGCAGAAGCTGCTGGTCATC
CTGGCCACAAACCAGCCTCTCCCCGCCAAGAAGAAGGTCCTGTTTGCACTGTGCTCCCTGCTGCGCCACT
TCCCCTATGCCCAGCAGCAGTTCCTGAAGCTCGGGGGCCTGCAGGTCCTCAGGAGCCTGGTACAGGAGAA
GAGTGCGAAGGTACTGGCCGTGCGTGTGGTCACCCTGCTCTATGACCTGGTCACTGAGAAGATGTTTGCT
GAGGAGGAGGCAGAGTTGACCCAGGATTCATCCCCAGAGAAGCTGCAGCAGTATCGCCAGGTGCAGCTCC
TGCCAGGCCTGCAGGAACAGGGTTGGTGTGAGATCACCGCCCAGCTCCTGGCCCTTCCAGAGCATGATGC
TCGGGAGAAGGTGCTGCAGACACTGGGTGCCCTCCTGACCACCTGCCGGGATCGCTACCGTCAGGACCTC
CAGTTGAGCAGGACACTAGGGCGTCTCCAAGCAGAGTACCAAGCCCTGGCCTCCCTGGAGCTCCAAGAAG
GCGAAGATGATGGCTACTTCCGGGAACTGCTGGCCTCCATCAACAGCTTGATGAAGGAACTAAGATGA

Translation (465 aa):
MAPQHLPSTRMASPGMLLGLLLTSCLTLCLSCQNSNNFALTNPEKSIHQESDTKETREEEELDTEILEVF
HPTQEWQTLQPGQAVPAGSHVRMNLQTGVNEVKLQQEDKFQNNLKGFKRGRRLDINANTYTSQDLKSALA
KFKEGTEMENSKDELARQATVKQLFRPIEELKKEFDELNVVLETDMQIMVRLINKFNSSSSSLEEKVAAL
FDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVI
LATNQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKSAKVLAVRVVTLLYDLVTEKMFA
EEEAELTQDSSPEKLQQYRQVQLLPGLQEQGWCEITAQLLALPEHDAREKVLQTLGALLTTCRDRYRQDL
QLSRTLGRLQAEYQALASLELQEGEDDGYFRELLASINSLMKELR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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