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Report for CCDS31048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31048.1 Public Homo sapiens 1 TRIM11 24 110 108 CCDS HistoryNCBI Gene:81559Re-query CCDS DB by CCDS ID:31048.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284551.11 ENSP00000284551.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284551.11Link to Ensembl Protein Viewer:ENSP00000284551.6Re-query CCDS DB by Nucleotide ID:ENST00000284551Re-query CCDS DB by Protein ID:ENSP00000284551
Original member Current member NCBI NM_145214.3 NP_660215.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145214.3Link to Protein Sequence:NP_660215.1Re-query CCDS DB by Nucleotide ID:NM_145214Re-query CCDS DB by Protein ID:NP_660215Link to BLAST:NP_660215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660215.1 468 Q96F44-1 468 100% 0 0

Chromosomal Locations for CCDS 31048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228394705 228395252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228396947 228397047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228397143 228397165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228400964 228401194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228402066 228402161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228406154 228406561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCCGCCCCCGACCTGTCCACCAACCTCCAGGAGGAGGCCACCTGCGCCATCTGCCTCGACTACTTCA
CGGATCCGGTGATGACCGACTGCGGCCACAACTTCTGCCGCGAGTGCATCCGGCGCTGCTGGGGCCAGCC
CGAGGGCCCGTACGCGTGCCCCGAGTGCCGCGAGCTGTCCCCGCAGAGGAACCTGCGGCCCAACCGCCCG
CTTGCTAAGATGGCCGAGATGGCGCGGCGCCTGCACCCGCCGTCGCCGGTCCCGCAGGGCGTGTGCCCCG
CGCACCGCGAGCCACTGGCCGCCTTCTGTGGCGACGAGCTGCGCCTCCTGTGTGCGGCCTGCGAGCGCTC
TGGGGAGCACTGGGCGCACCGCGTGCGGCCGCTGCAGGACGCGGCCGAAGACCTCAAGGCGAAGCTGGAG
AAGTCACTGGAGCATCTCCGGAAGCAGATGCAGGATGCGTTGCTGTTCCAAGCCCAGGCGGATGAGACCT
GCGTCTTGTGGCAGAAGATGGTGGAGAGCCAGCGGCAGAACGTGCTGGGTGAGTTCGAGCGTCTTCGCCG
TTTGCTGGCAGAGGAGGAGCAGCAGCTGCTGCAGAGGCTGGAGGAGGAGGAGCTGGAGGTGCTGCCCCGG
CTGCGGGAGGGCGCAGCCCACCTAGGCCAGCAGAGCGCCCACCTAGCTGAGCTCATCGCCGAGCTCGAGG
GCCGCTGCCAGCTGCCTGCTCTGGGGCTGCTGCAGGACATCAAGGACGCCCTGCGCAGGGTCCAGGATGT
GAAGCTGCAGCCCCCAGAAGTTGTGCCTATGGAGCTGAGGACCGTGTGCAGGGTCCCGGGACTGGTAGAG
ACACTGCGGAGGTTTCGAGGGGACGTGACCTTGGACCCGGACACCGCCAACCCTGAGCTGATCCTGTCTG
AAGACAGGCGGAGCGTGCAGCGGGGGGACCTACGGCAGGCCCTGCCGGACAGCCCAGAGCGCTTTGACCC
CGGCCCCTGCGTGCTGGGCCAGGAGCGCTTCACCTCAGGCCGCCACTACTGGGAGGTGGAGGTTGGGGAC
CGCACCAGCTGGGCCCTGGGGGTGTGCAGGGAGAACGTGAACAGGAAGGAGAAGGGCGAGCTGTCCGCGG
GCAACGGCTTCTGGATCCTGGTCTTCCTGGGGAGCTATTACAATTCCTCGGAACGGGCCTTGGCTCCACT
CCGGGACCCACCCAGGCGCGTGGGGATCTTTCTGGACTACGAGGCTGGACATCTCTCTTTCTACAGTGCC
ACCGATGGGTCACTGCTATTCATCTTTCCCGAGATCCCCTTCTCGGGGACGCTGCGGCCCCTCTTCTCAC
CCCTGTCCAGCAGCCCGACCCCGATGACTATCTGCCGGCCGAAAGGTGGGTCCGGGGACACCCTGGCTCC
CCAGTGA

Translation (468 aa):
MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSPQRNLRPNRP
LAKMAEMARRLHPPSPVPQGVCPAHREPLAAFCGDELRLLCAACERSGEHWAHRVRPLQDAAEDLKAKLE
KSLEHLRKQMQDALLFQAQADETCVLWQKMVESQRQNVLGEFERLRRLLAEEEQQLLQRLEEEELEVLPR
LREGAAHLGQQSAHLAELIAELEGRCQLPALGLLQDIKDALRRVQDVKLQPPEVVPMELRTVCRVPGLVE
TLRRFRGDVTLDPDTANPELILSEDRRSVQRGDLRQALPDSPERFDPGPCVLGQERFTSGRHYWEVEVGD
RTSWALGVCRENVNRKEKGELSAGNGFWILVFLGSYYNSSERALAPLRDPPRRVGIFLDYEAGHLSFYSA
TDGSLLFIFPEIPFSGTLRPLFSPLSSSPTPMTICRPKGGSGDTLAPQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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