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Report for CCDS2172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2172.1 Public Homo sapiens 2 TMEM163 24 110 108 CCDS HistoryNCBI Gene:81615Re-query CCDS DB by CCDS ID:2172.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281924.6 ENSP00000281924.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281924.6Link to Ensembl Protein Viewer:ENSP00000281924.6Re-query CCDS DB by Nucleotide ID:ENST00000281924Re-query CCDS DB by Protein ID:ENSP00000281924
Original member Current member NCBI NM_030923.5 NP_112185.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030923.5Link to Protein Sequence:NP_112185.1Re-query CCDS DB by Nucleotide ID:NM_030923Re-query CCDS DB by Protein ID:NP_112185Link to BLAST:NP_112185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112185.1 289 Q8TC26-1 289 100% 0 0

Chromosomal Locations for CCDS 2172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 134456716 134456776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134458032 134458173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134466114 134466225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134502901 134502997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134550570 134550661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134552048 134552091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134713200 134713319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134718734 134718935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGAGCCGGCCGCGGGCATCCAGCGCCGCAGCTCCCAGGGGCCCACCGTCCCGCCGCCGCCCCGGGGCC
ACGCGCCACCGGCTGCCGCCCCCGGCCCGGCCCCGCTGAGCTCCCCGGTGCGCGAGCCGCCCCAGCTGGA
GGAGGAGCGGCAGGTGCGGATCAGCGAGAGCGGCCAGTTCAGCGACGGGCTGGAGGACCGAGGCTTACTA
GAAAGCAGCACCCGCCTGAAACCTCACGAAGCCCAGAACTACAGGAAGAAGGCATTGTGGGTGTCCTGGT
TCTCCATCATTGTCACCCTGGCCCTCGCGGTGGCTGCCTTTACTGTCTCCGTTATGAGGTACAGCGCCTC
TGCTTTTGGGTTTGCATTTGATGCCATCCTGGACGTCCTGTCATCGGCGATTGTCCTGTGGCGTTACAGC
AACGCGGCCGCTGTGCACTCTGCCCATAGGGAGTACATAGCCTGTGTCATCTTGGGGGTGATATTCCTTC
TGTCATCCATATGTATAGTGGTCAAAGCCATCCATGACCTCTCAACTAGGCTGCTCCCAGAAGTGGACGA
TTTCCTGTTCAGTGTCTCCATTTTAAGTGGGATTCTTTGCAGCATCCTGGCCGTGTTGAAGTTCATGCTG
GGGAAGGTTCTGACCAGTAGAGCACTCATAACAGATGGGTTTAACTCCCTCGTGGGTGGCGTGATGGGCT
TCTCCATTCTTCTGAGCGCGGAAGTGTTCAAGCATGACTCGGCGGTCTGGTACCTGGACGGCAGCATAGG
CGTTCTGATCGGCCTCACCATATTTGCCTATGGGGTCAAACTCCTCATCGACATGGTGCCGAGGGTGAGG
CAGACACGTCACTACGAGATGTTTGAGTGA

Translation (289 aa):
MEPAAGIQRRSSQGPTVPPPPRGHAPPAAAPGPAPLSSPVREPPQLEEERQVRISESGQFSDGLEDRGLL
ESSTRLKPHEAQNYRKKALWVSWFSIIVTLALAVAAFTVSVMRYSASAFGFAFDAILDVLSSAIVLWRYS
NAAAVHSAHREYIACVILGVIFLLSSICIVVKAIHDLSTRLLPEVDDFLFSVSILSGILCSILAVLKFML
GKVLTSRALITDGFNSLVGGVMGFSILLSAEVFKHDSAVWYLDGSIGVLIGLTIFAYGVKLLIDMVPRVR
QTRHYEMFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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