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Report for CCDS42323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42323.1 Public Homo sapiens 17 KRTAP1-3 24 110 108 CCDS HistoryNCBI Gene:81850Re-query CCDS DB by CCDS ID:42323.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344363.7 ENSP00000344420.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344363.7Link to Ensembl Protein Viewer:ENSP00000344420.5Re-query CCDS DB by Nucleotide ID:ENST00000344363Re-query CCDS DB by Protein ID:ENSP00000344420
Original member Current member NCBI NM_030966.2 NP_112228.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030966.2Link to Protein Sequence:NP_112228.1Re-query CCDS DB by Nucleotide ID:NM_030966Re-query CCDS DB by Protein ID:NP_112228Link to BLAST:NP_112228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112228.1 167 Q8IUG1 167 100% 0 0

Chromosomal Locations for CCDS 42323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41034318 41034821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGACCTGCTGCCAGACCAGCTTCTGTGGATATCCCAGCTGCTCCACCAGTGGGACATGCGGCTCCAGCT
GCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGACCAGCTTCTGCGGATT
TCCTAGCTTCTCAACTAGTGGGACCTGCAGCTCCAGTTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGC
TGCCAGCCAAGCTGCTGCCAGACCAGCTCCTGCGGAACTGGCTGTGGCATTGGTGGTGGCATTGGCTATG
GCCAGGAGGGCAGCAGTGGAGCTGTGAGCACCCGTATCAGGTGGTGCCGCCCAGACTGCCGTGTGGAGGG
TACCTGCCTGCCCCCCTGCTGTGTGGTGAGCTGCACACCCCCAACCTGCTGCCAGCTGCACCACGCCGAG
GCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGTCTGCTGCTGCTACTCCTGTG
AGCCCACCTGCTAA

Translation (167 aa):
MTCCQTSFCGYPSCSTSGTCGSSCCQPSCCETSCCQPSCCQTSFCGFPSFSTSGTCSSSCCQPSCCETSC
CQPSCCQTSSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAE
ASCCRPSYCGQSCCRPVCCCYSCEPTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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