NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6859.1 Public Homo sapiens 9 ARPC5L 24 110 108 CCDS HistoryNCBI Gene:81873Re-query CCDS DB by CCDS ID:6859.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259477.6 ENSP00000259477.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000259477.6Link to Ensembl Protein Viewer:ENSP00000259477.6Re-query CCDS DB by Nucleotide ID:ENST00000259477Re-query CCDS DB by Protein ID:ENSP00000259477
Original member Current member EBI ENST00000353214.6 ENSP00000345361.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000353214.6Link to Ensembl Protein Viewer:ENSP00000345361.2Re-query CCDS DB by Nucleotide ID:ENST00000353214Re-query CCDS DB by Protein ID:ENSP00000345361
Original member Current member NCBI NM_030978.3 NP_112240.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030978.3Link to Protein Sequence:NP_112240.1Re-query CCDS DB by Nucleotide ID:NM_030978Re-query CCDS DB by Protein ID:NP_112240Link to BLAST:NP_112240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112240.1 153 Q9BPX5 153 100% 0 0

Chromosomal Locations for CCDS 6859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124869291 124869439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124873692 124873764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124874975 124875151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124876878 124876940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCCCGGAACACGCTGTCCTCGCGCTTCCGCCGGGTGGACATCGACGAATTTGACGAGAACAAATTTG
TGGACGAGCAGGAGGAGGCGGCGGCGGCGGCGGCGGAGCCAGGCCCGGACCCGAGCGAGGTGGACGGGCT
CCTGCGGCAAGGGGACATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCCGTCAACACCAAGAAT
CAAGCTGTGAAGGAGCGAGCCCAGGGCGTGGTGCTGAAAGTGCTCACAAACTTCAAGAGCAGTGAGATTG
AGCAGGCTGTGCAGTCACTGGACAGAAACGGCGTTGACTTGTTAATGAAGTACATTTATAAAGGCTTTGA
GAAGCCCACAGAAAATAGCAGCGCAGTGTTACTCCAGTGGCACGAAAAGGCCTTAGCAGTAGGAGGACTA
GGCTCCATTATAAGAGTTCTTACAGCAAGAAAGACTGTTTAA

Translation (153 aa):
MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRNSPVNTKN
QAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGL
GSIIRVLTARKTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH