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Report for CCDS1942.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1942.2 Public Homo sapiens 2 INO80B 24 110 108 CCDS HistoryNCBI Gene:83444Re-query CCDS DB by CCDS ID:1942.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1942.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233331.12 ENSP00000233331.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000233331.12Link to Ensembl Protein Viewer:ENSP00000233331.7Re-query CCDS DB by Nucleotide ID:ENST00000233331Re-query CCDS DB by Protein ID:ENSP00000233331
Original member Current member NCBI NM_031288.4 NP_112578.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031288.4Link to Protein Sequence:NP_112578.2Re-query CCDS DB by Nucleotide ID:NM_031288Re-query CCDS DB by Protein ID:NP_112578Link to BLAST:NP_112578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112578.2 356 Q9C086 356 100% 0 0

Chromosomal Locations for CCDS 1942.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74455117 74455174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74455406 74455598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74455818 74455936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74456103 74456272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74457334 74457864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAGTAAGCTGTGGCGGCGTGGGAGCACCTCTGGGGCTATGGAGGCCCCTGAGCCGGGAGAAGCCCTGG
AGTTGAGCCTGGCGGGTGCCCATGGCCATGGAGTGCACAAGAAAAAACACAAGAAGCACAAGAAGAAACA
CAAGAAGAAACACCATCAGGAAGAAGACGCCGGGCCCACGCAGCCGTCCCCTGCCAAGCCTCAGCTCAAA
CTCAAAATCAAGCTTGGGGGACAAGTCCTGGGGACCAAGAGTGTTCCTACCTTCACTGTGATCCCAGAGG
GGCCTCGCTCACCCTCTCCCCTTATGGTTGTGGATAATGAAGAGGAACCTATGGAAGGAGTCCCCCTTGA
GCAGTACCGTGCCTGGCTGGATGAAGACAGTAATCTCTCTCCCTCTCCACTTCGGGACCTATCAGGAGGG
TTAGGGGGTCAGGAGGAAGAGGAGGAACAGAGGTGGCTGGATGCCCTGGAGAAGGGGGAGCTGGATGACA
ATGGAGACCTCAAGAAGGAGATCAATGAGCGGCTGCTTACTGCTCGACAGCGAGCTCTGCTCCAGAAGGC
GCGGAGTCAACCTTCCCCTATGCTGCCGCTGCCTGTAGCTGAGGGCTGCCCACCTCCCGCCCTCACAGAG
GAGATGCTGCTGAAGCGCGAGGAGCGGGCGCGGAAGCGGCGGCTCCAGGCGGCGCGGCGGGCAGAAGAGC
ACAAGAACCAGACTATCGAGCGCCTCACCAAGACTGCGGCGACCAGTGGGCGGGGAGGCCGGGGGGGCGC
ACGGGGCGAGCGGCGGGGAGGGCGGGCTGCGGCTCCGGCCCCCATGGTGCGCTACTGCAGCGGAGCACAG
GGTTCCACCCTTTCCTTCCCACCTGGCGTCCCCGCCCCCACGGCAGTGTCTCAGCGGCCATCCCCCTCAG
GCCCGCCGCCGCGCTGCTCTGTCCCCGGCTGTCCCCATCCGCGCCGCTACGCTTGCTCCCGCACAGGCCA
GGCACTCTGTAGTCTTCAGTGCTACCGCATCAACCTGCAGATGCGGCTGGGGGGGCCCGAGGGTCCTGGA
TCCCCCCTTTTGGCTACGTAA

Translation (356 aa):
MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEDAGPTQPSPAKPQLK
LKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLSGG
LGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTE
EMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQ
GSTLSFPPGVPAPTAVSQRPSPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPG
SPLLAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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