NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9096.1 Public Homo sapiens 12 GLT8D2 24 110 108 CCDS HistoryNCBI Gene:83468Re-query CCDS DB by CCDS ID:9096.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9096.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360814.9 ENSP00000354053.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360814.9Link to Ensembl Protein Viewer:ENSP00000354053.4Re-query CCDS DB by Nucleotide ID:ENST00000360814Re-query CCDS DB by Protein ID:ENSP00000354053
Original member Current member EBI ENST00000548660.5 ENSP00000447450.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548660.5Link to Ensembl Protein Viewer:ENSP00000447450.1Re-query CCDS DB by Nucleotide ID:ENST00000548660Re-query CCDS DB by Protein ID:ENSP00000447450
Original member Current member EBI ENST00000546436.5 ENSP00000449750.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546436.5Link to Ensembl Protein Viewer:ENSP00000449750.1Re-query CCDS DB by Nucleotide ID:ENST00000546436Re-query CCDS DB by Protein ID:ENSP00000449750
Original member Current member NCBI NM_001316967.2 NP_001303896.1 Accepted alive Link to Nucleotide Sequence:NM_001316967.2Link to Protein Sequence:NP_001303896.1Re-query CCDS DB by Nucleotide ID:NM_001316967Re-query CCDS DB by Protein ID:NP_001303896Link to BLAST:NP_001303896.1
Original member Current member NCBI NM_001384711.1 NP_001371640.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384711.1Link to Protein Sequence:NP_001371640.1Re-query CCDS DB by Nucleotide ID:NM_001384711Re-query CCDS DB by Protein ID:NP_001371640Link to BLAST:NP_001371640.1
Original member Current member NCBI NM_001384713.1 NP_001371642.1 Accepted alive Link to Nucleotide Sequence:NM_001384713.1Link to Protein Sequence:NP_001371642.1Re-query CCDS DB by Nucleotide ID:NM_001384713Re-query CCDS DB by Protein ID:NP_001371642Link to BLAST:NP_001371642.1
Original member Current member NCBI NM_001384715.1 NP_001371644.1 Accepted alive Link to Nucleotide Sequence:NM_001384715.1Link to Protein Sequence:NP_001371644.1Re-query CCDS DB by Nucleotide ID:NM_001384715Re-query CCDS DB by Protein ID:NP_001371644Link to BLAST:NP_001371644.1
Original member Current member NCBI NM_001384716.1 NP_001371645.1 Accepted alive Link to Nucleotide Sequence:NM_001384716.1Link to Protein Sequence:NP_001371645.1Re-query CCDS DB by Nucleotide ID:NM_001384716Re-query CCDS DB by Protein ID:NP_001371645Link to BLAST:NP_001371645.1
Original member Current member NCBI NM_001384717.1 NP_001371646.1 Accepted alive Link to Nucleotide Sequence:NM_001384717.1Link to Protein Sequence:NP_001371646.1Re-query CCDS DB by Nucleotide ID:NM_001384717Re-query CCDS DB by Protein ID:NP_001371646Link to BLAST:NP_001371646.1
Original member Current member NCBI NM_001384718.1 NP_001371647.1 Accepted alive Link to Nucleotide Sequence:NM_001384718.1Link to Protein Sequence:NP_001371647.1Re-query CCDS DB by Nucleotide ID:NM_001384718Re-query CCDS DB by Protein ID:NP_001371647Link to BLAST:NP_001371647.1
Original member Current member NCBI NM_001384719.1 NP_001371648.1 Accepted alive Link to Nucleotide Sequence:NM_001384719.1Link to Protein Sequence:NP_001371648.1Re-query CCDS DB by Nucleotide ID:NM_001384719Re-query CCDS DB by Protein ID:NP_001371648Link to BLAST:NP_001371648.1
Original member Current member NCBI NM_001384720.1 NP_001371649.1 Accepted alive Link to Nucleotide Sequence:NM_001384720.1Link to Protein Sequence:NP_001371649.1Re-query CCDS DB by Nucleotide ID:NM_001384720Re-query CCDS DB by Protein ID:NP_001371649Link to BLAST:NP_001371649.1
Original member Current member NCBI NM_001384721.1 NP_001371650.1 Accepted alive Link to Nucleotide Sequence:NM_001384721.1Link to Protein Sequence:NP_001371650.1Re-query CCDS DB by Nucleotide ID:NM_001384721Re-query CCDS DB by Protein ID:NP_001371650Link to BLAST:NP_001371650.1
Original member Current member NCBI NM_001384722.1 NP_001371651.1 Accepted alive Link to Nucleotide Sequence:NM_001384722.1Link to Protein Sequence:NP_001371651.1Re-query CCDS DB by Nucleotide ID:NM_001384722Re-query CCDS DB by Protein ID:NP_001371651Link to BLAST:NP_001371651.1
Original member Current member NCBI NM_031302.5 NP_112592.1 Accepted alive Link to Nucleotide Sequence:NM_031302.5Link to Protein Sequence:NP_112592.1Re-query CCDS DB by Nucleotide ID:NM_031302Re-query CCDS DB by Protein ID:NP_112592Link to BLAST:NP_112592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303896.1 349 Q9H1C3 349 100% 0 0
NP_001371640.1 349 Q9H1C3 349 100% 0 0
NP_001371642.1 349 Q9H1C3 349 100% 0 0
NP_001371644.1 349 Q9H1C3 349 100% 0 0
NP_001371645.1 349 Q9H1C3 349 100% 0 0
NP_001371646.1 349 Q9H1C3 349 100% 0 0
NP_001371647.1 349 Q9H1C3 349 100% 0 0
NP_001371648.1 349 Q9H1C3 349 100% 0 0
NP_001371649.1 349 Q9H1C3 349 100% 0 0
NP_001371650.1 349 Q9H1C3 349 100% 0 0
NP_001371651.1 349 Q9H1C3 349 100% 0 0
NP_112592.1 349 Q9H1C3 349 100% 0 0

Chromosomal Locations for CCDS 9096.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103989408 103989577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103993392 103993504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103994335 103994501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103996735 103996847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103997451 103997535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103999397 103999514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104003135 104003306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104015013 104015105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104019630 104019648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCTCTGTTACGAAAAATTAATCAGGTGCTGCTGTTCCTTCTGATCGTGACCCTCTGTGTGATTCTGT
ATAAGAAAGTTCATAAGGGGACTGTGCCCAAGAATGACGCAGATGATGAATCCGAGACTCCTGAAGAACT
GGAAGAAGAGATTCCTGTGGTGATTTGTGCTGCAGCAGGGAGGATGGGTGCCACTATGGCTGCCATCAAT
AGCATCTACAGCAACACTGACGCCAACATCTTGTTCTATGTAGTGGGACTCCGGAATACTCTGACTCGAA
TACGAAAATGGATTGAACATTCCAAACTGAGAGAAATAAACTTTAAAATCGTGGAATTCAACCCGATGGT
CCTCAAAGGGAAGATCAGACCAGACTCATCGAGGCCTGAATTGCTCCAGCCTCTGAACTTTGTTCGATTT
TATCTCCCTCTACTTATCCACCAACACGAGAAAGTCATCTATTTGGACGATGATGTAATTGTACAAGGTG
ATATCCAAGAACTGTATGACACCACCTTGGCCCTGGGCCACGCGGCGGCTTTCTCAGATGACTGCGATTT
GCCCTCTGCTCAGGACATAAACAGACTCGTGGGACTTCAGAACACATATATGGGCTATCTGGACTACCGG
AAGAAGGCCATCAAGGACCTTGGCATCAGCCCCAGCACCTGCTCTTTCAATCCTGGTGTGATTGTTGCCA
ACATGACAGAATGGAAGCACCAGCGCATCACCAAGCAATTGGAGAAATGGATGCAAAAGAATGTGGAGGA
AAACCTCTATAGCAGCTCCCTGGGAGGAGGGGTGGCCACCTCCCCAATGCTGATTGTGTTTCATGGGAAA
TATTCCACAATTAACCCCCTGTGGCACATAAGGCACCTGGGCTGGAATCCAGATGCCAGATATTCGGAGC
ATTTTCTGCAGGAAGCTAAATTACTCCACTGGAATGGAAGACATAAACCTTGGGACTTCCCTAGTGTTCA
CAACGACTTATGGGAAAGCTGGTTTGTTCCTGACCCTGCAGGGATATTTAAACTCAATCACCATAGCTGA

Translation (349 aa):
MALLRKINQVLLFLLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAGRMGATMAAIN
SIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINFKIVEFNPMVLKGKIRPDSSRPELLQPLNFVRF
YLPLLIHQHEKVIYLDDDVIVQGDIQELYDTTLALGHAAAFSDDCDLPSAQDINRLVGLQNTYMGYLDYR
KKAIKDLGISPSTCSFNPGVIVANMTEWKHQRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGK
YSTINPLWHIRHLGWNPDARYSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKLNHHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH