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Report for CCDS4571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4571.1 Public Homo sapiens 6 H4C1 24 110 108 CCDS HistoryNCBI Gene:8359Re-query CCDS DB by CCDS ID:4571.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617569.2 ENSP00000479106.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617569.2Link to Ensembl Protein Viewer:ENSP00000479106.2Re-query CCDS DB by Nucleotide ID:ENST00000617569Re-query CCDS DB by Protein ID:ENSP00000479106
Original member Current member NCBI NM_003538.4 NP_003529.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003538.4Link to Protein Sequence:NP_003529.1Re-query CCDS DB by Nucleotide ID:NM_003538Re-query CCDS DB by Protein ID:NP_003529Link to BLAST:NP_003529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003529.1 103 P62805 103 100% 0 0

Chromosomal Locations for CCDS 4571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26021679 26021990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGTCTGGACGTGGTAAGGGCGGGAAGGGTTTGGGTAAGGGGGGTGCCAAGCGCCACCGCAAGGTGTTGC
GTGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGTCTGGCCCGGCGTGGCGGTGTGAAGCGGAT
CTCTGGTCTGATCTACGAGGAGACTCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCT
GTCACCTATACGGAGCACGCCAAGCGCAAGACAGTCACTGCCATGGACGTGGTCTACGCGCTTAAGCGCC
AGGGACGCACCCTTTATGGCTTTGGCGGTTAA

Translation (103 aa):
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDA
VTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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