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Report for CCDS5980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5980.1 Public Homo sapiens 8 SLC35G5 24 110 108 CCDS HistoryNCBI Gene:83650Re-query CCDS DB by CCDS ID:5980.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382435.5 ENSP00000371872.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382435.5Link to Ensembl Protein Viewer:ENSP00000371872.5Re-query CCDS DB by Nucleotide ID:ENST00000382435Re-query CCDS DB by Protein ID:ENSP00000371872
Original member Current member NCBI NM_054028.2 NP_473369.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_054028.2Link to Protein Sequence:NP_473369.1Re-query CCDS DB by Nucleotide ID:NM_054028Re-query CCDS DB by Protein ID:NP_473369Link to BLAST:NP_473369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473369.1 338 Q96KT7 338 100% 0 0

Chromosomal Locations for CCDS 5980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11331107 11332123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCTGGCAGTCACCCCTACTTCAACCTGCCTGACTCCACACACCCATCGCCGCCCTCCGCTCCACCCA
GCCTCCGCTGGCACCAGCGCTGCCAGCCCTCTGGTGCCACCAATGGCCTGCTGGTGGCCCTGCTGGGTGG
GGGCCTGCCTGCTGGCTTCGTGGGCCCCCTTTCTCGTATGGCTTACCAGGGTTCCAACCTGCCCTCGCTG
GAGCTGCTCATCTGTCGATGCCTCTTCCACCTCCCTATTGCCCTGCTACTTAAACTGCGTGGCGACCCCC
TTCTGGGACCTCCTGACATCCGAGGCTGGGCCTGCTTCTGTGCCCTGCTCAACGTCCTCAGCATTGGATG
TGCCTACAGTGCAGTTCAGGTGGTGCCCGCTGGCAACGCTGCCACTGTTCGCAAAGGTTCTTCCACCGTA
TGCTCCGCTGTCCTCACCCTCTGCCTTGAGAGCCAGGGTCTCGGTGGCTACGAGTGGTGTGGACTGTTGG
GCAGCATCCTAGGACTAATCATCATTCTGGGACCTGGACTCTGGACACTACAGGAGGGGACCACAGGTGT
CTACACCACCCTGGGCTATGTGCAGGCTTTCCTGGGAGGCCTGGCGCTGTCCCTGGGGCTTCTGGTCTAT
CGTTCTCTGCACTTTCCCTCCTGCCTCCCAACAGTGGCCTTCCTATCTGGCTTGGTGGGGCTGCTGGGCT
GTGTGCCAGGCCTCTTTGTGCTGCAGACCCCCGTGTTGCCCAGTGACCTCCTGAGTTGGAGTTGTGTGGG
GGCAGAGGGGATCCTCGCCTTGGTCTCCTTCACATGTGTGGGCTATGCGGTCACCAAGGCCCACCCTGCC
CTGGTGTGCGCTGTCCTGCATTCCGAGGTGGTTGTGGCCCTTATACTGCAGTATTATATGCTCCATGAGA
CTGTGGCACTTTCTGACATCATGGGGGCAGGGGTTGTGCTGGGCAGCATTGCCATCATTACAGCCCGGAA
CCTCAGCTGTGAGAGGACAGGGAAGGTGGAGGAGTGA

Translation (338 aa):
MAGSHPYFNLPDSTHPSPPSAPPSLRWHQRCQPSGATNGLLVALLGGGLPAGFVGPLSRMAYQGSNLPSL
ELLICRCLFHLPIALLLKLRGDPLLGPPDIRGWACFCALLNVLSIGCAYSAVQVVPAGNAATVRKGSSTV
CSAVLTLCLESQGLGGYEWCGLLGSILGLIIILGPGLWTLQEGTTGVYTTLGYVQAFLGGLALSLGLLVY
RSLHFPSCLPTVAFLSGLVGLLGCVPGLFVLQTPVLPSDLLSWSCVGAEGILALVSFTCVGYAVTKAHPA
LVCAVLHSEVVVALILQYYMLHETVALSDIMGAGVVLGSIAIITARNLSCERTGKVEE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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