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Report for CCDS28615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28615.1 Public Mus musculus 17 Ephx3 23 108 98 CCDS HistoryNCBI Gene:71932Re-query CCDS DB by CCDS ID:28615.1Re-query CCDS DB by GeneID:71932See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087721.9 ENSMUSP00000085013.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087721.9Link to Ensembl Protein Viewer:ENSMUSP00000085013.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087721Re-query CCDS DB by Protein ID:ENSMUSP00000085013
Original member Current member NCBI NM_001033163.4 NP_001028335.1 Accepted alive Link to Nucleotide Sequence:NM_001033163.4Link to Protein Sequence:NP_001028335.1Re-query CCDS DB by Nucleotide ID:NM_001033163Re-query CCDS DB by Protein ID:NP_001028335Link to BLAST:NP_001028335.1

Chromosomal Locations for CCDS 28615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32184896 32185121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32185216 32185352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32185446 32185549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32188176 32188304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32188411 32188568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32188786 32188871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32189014 32189448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGAGAGGTGGCAGTATCTGTCCGAGCCGCGCATCTGTTTCCTCGACCGGTCCAGTGGACTCCGATAGCA
CGGTGGAATCCCAAAACAAAGGTGGTGGGCTGCTGGCGCCAGCACCCCTGGCTCAGTCTCCCGACCACGG
CGGCTCTGTAGTCGTCCCAGAGCGCAAGGATATGCCGGAGTTTGTGGTGACAGCGCTACTCGCACCCTCA
CGCCTCTCGCTGAAGCTGCTGCGAGCGCTGGTGATGAGCCTGGTGTACTTGGCTGCCTTGGTGGCCGCGT
TTGTCTACAGCTGCATCGCGCTCACCCATGTGATGTGCCGTCCTCGCAGGGGCTGCTGCGGCCGCCAGAG
GTTGTCTCCCCCAGAGTGCCTGAGAGACCCCACGCTGGGCGAGCATTGCTTTCTAACCCTCAGGGTGAGT
GTTCCTCCCGTGAAGAGTTCCGGCCTGCGTCTGCACTATGTCTCTGCTGGTCATGGCAATGGGCCACTCA
TGCTATTTCTGCATGGCTTCCCAGAGAACTGGTTCAGCTGGCGCTACCAGCTGCGAGAGTTTCAGAGCCA
TTTCCATGTCGTGGCTGTAGACATGCGTGGTTATAGTCCCTCTGATGCTCCAAAGGAAGTGGATTGTTAC
ACCATTGACTTGTTGTTGGATGACATCAAGGATACCATCCTAGGCCTGGGGTACTCCAAGTGCATCCTCG
TGAGCCACGACTGGGGGGCCTCCCTTGCCTGGGAGTTCTCCATCTACTACCCATCCCTAGTGGAGCGTAT
GGTTGTGGCCAATGGTCCTCCCATGTCAGTGATCCAAGAATACTCAATCCACCACATCGGCCAGATATTC
CGATCAAACTACATGTTCCTGTTCCAGCTTCCCTGGCTGCCAGAGAAGCTGTTGTCTATGTCTGACTTCC
AGATTCTCAAAGACACATTCACTCACCGCAAGAACGGCATCCCAGGACTGACTCCTTCTGAACTTGAAGC
ATTCCTTTATCACTTCTCACAACCTGGATGCCTCACTGGGCCCATCAACTACTACAGGAACGTGTTCAGG
AACTTCCCCCTGGAGCCCAAGAAACTGTCAACACCCACGCTGTTGCTGTGGGGGGAAAAAGACTTCGCCT
TCCAGCAGGGGCTGGTGGAAGCCATTGGAAGACACTTTGTGCCCGGCCGGTTGGAAAGCCACATTTTGCC
AGGCAGTGGGCACTGGATTCCACAGAGCCATCCTCAGGAGATGCATCAGTACATGTGGGCCTTCTTGCAA
GACCTGCTGGGCTAG

Translation (424 aa):
MRGGSICPSRASVSSTGPVDSDSTVESQNKGGGLLAPAPLAQSPDHGGSVVVPERKDMPEFVVTALLAPS
RLSLKLLRALVMSLVYLAALVAAFVYSCIALTHVMCRPRRGCCGRQRLSPPECLRDPTLGEHCFLTLRVS
VPPVKSSGLRLHYVSAGHGNGPLMLFLHGFPENWFSWRYQLREFQSHFHVVAVDMRGYSPSDAPKEVDCY
TIDLLLDDIKDTILGLGYSKCILVSHDWGASLAWEFSIYYPSLVERMVVANGPPMSVIQEYSIHHIGQIF
RSNYMFLFQLPWLPEKLLSMSDFQILKDTFTHRKNGIPGLTPSELEAFLYHFSQPGCLTGPINYYRNVFR
NFPLEPKKLSTPTLLLWGEKDFAFQQGLVEAIGRHFVPGRLESHILPGSGHWIPQSHPQEMHQYMWAFLQ
DLLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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