NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4057.1 Public Homo sapiens 5 ATG10 24 110 108 CCDS HistoryNCBI Gene:83734Re-query CCDS DB by CCDS ID:4057.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4057.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282185.8 ENSP00000282185.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282185.8Link to Ensembl Protein Viewer:ENSP00000282185.3Re-query CCDS DB by Nucleotide ID:ENST00000282185Re-query CCDS DB by Protein ID:ENSP00000282185
Original member Current member EBI ENST00000458350.7 ENSP00000404938.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458350.7Link to Ensembl Protein Viewer:ENSP00000404938.3Re-query CCDS DB by Nucleotide ID:ENST00000458350Re-query CCDS DB by Protein ID:ENSP00000404938
Original member Current member NCBI NM_001131028.2 NP_001124500.1 Accepted alive Link to Nucleotide Sequence:NM_001131028.2Link to Protein Sequence:NP_001124500.1Re-query CCDS DB by Nucleotide ID:NM_001131028Re-query CCDS DB by Protein ID:NP_001124500Link to BLAST:NP_001124500.1
Original member Current member NCBI NM_031482.5 NP_113670.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031482.5Link to Protein Sequence:NP_113670.1Re-query CCDS DB by Nucleotide ID:NM_031482Re-query CCDS DB by Protein ID:NP_113670Link to BLAST:NP_113670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124500.1 220 Q9H0Y0-1 220 100% 0 0
NP_113670.1 220 Q9H0Y0-1 220 100% 0 0

Chromosomal Locations for CCDS 4057.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 81987571 81987678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82058495 82058602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82164399 82164537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82178490 82178587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82252562 82252659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82253314 82253425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGAAGAAGATGAGTTCATTGGAGAAAAAACATTCCAACGTTATTGTGCAGAATTCATTAAACATTCAC
AACAGATAGGTGATAGTTGGGAATGGAGACCATCAAAGGACTGTTCTGATGGCTACATGTGCAAAATACA
CTTTCAAATTAAGAATGGGTCTGTGATGTCACATCTAGGAGCATCTACCCATGGACAGACATGTCTTCCC
ATGGAGGAGGCTTTCGAGCTACCCTTGGATGATTGTGAAGTGATTGAAACTGCAGCAGCGTCCGAAGTGA
TTAAATATGAGTATCATGTCTTATATTCCTGTAGCTACCAAGTGCCTGTACTTTACTTTAGGGCAAGCTT
TTTAGATGGGAGACCTTTAACTCTGAAGGACATATGGGAAGGAGTTCATGAGTGCTATAAGATGCGACTG
CTACAGGGACCATGGGACACTATTACGCAACAGGAACATCCAATACTTGGGCAACCCTTTTTTGTACTTC
ATCCCTGCAAGACGAATGAATTCATGACTCCTGTATTAAAGAATTCTCAGAAAATCAATAAGAATGTCAA
CTATATCACATCATGGCTGAGCATTGTAGGGCCAGTTGTTGGGCTGAATCTACCTCTGAGTTATGCCAAA
GCAACGTCTCAGGATGAACGAAATGTCCCTTAA

Translation (220 aa):
MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLGASTHGQTCLP
MEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRL
LQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPLSYAK
ATSQDERNVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH