NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3221.1 Public Homo sapiens 3 SPATA16 24 110 108 CCDS HistoryNCBI Gene:83893Re-query CCDS DB by CCDS ID:3221.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351008.4 ENSP00000341765.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000351008.4Link to Ensembl Protein Viewer:ENSP00000341765.3Re-query CCDS DB by Nucleotide ID:ENST00000351008Re-query CCDS DB by Protein ID:ENSP00000341765
Original member Current member NCBI NM_031955.6 NP_114161.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031955.6Link to Protein Sequence:NP_114161.3Re-query CCDS DB by Nucleotide ID:NM_031955Re-query CCDS DB by Protein ID:NP_114161Link to BLAST:NP_114161.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114161.3 569 Q9BXB7 569 100% 0 0

Chromosomal Locations for CCDS 3221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 172889570 172889692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172913661 172913744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172916317 172916481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172924208 172924317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172925346 172925492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172956677 172956824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172976968 172977052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 173019486 173019575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 173048949 173049094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 173117120 173117731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGATGCAGGAAGCAGTAGGAGTTTGGAGAATGCAGTGAATAGGATCTATCATGATCAGCTTGTTCCAA
AGATAAACACAAGCAAGAAAATGTCCACCTTAGCGCACCCACCTAACATCCTGGAAATGTCACAAGAGAT
TAAGAAAAACTGTGGAGGTAAACAGGTAGAAATCACACTTGAAAGAACAAAAATGACAAAGGGCATCAAA
GAAAAACAAAGCAATGATTTAGAGAAAGCAGCCTTTAAACGGAAGGCAGAAGGTGAAGAAAAGCCAACTA
GAAAGAAACAGGCAAAGATAACAGAACTTGACAATCAGTTAATCACCATGCCTCTGCCTCACATCCCCTT
AAAGAACATAATGGATGTGGAAATGAAGTTGGTCTACATTGATGAAATGGGTGTTCGCTATGAGTTTGTA
GAGTCCTTCATGTCTACTGGGAGTCAGCCAACATGCCAAGCTGCTGAAATAGTAGACCCTTTGAGTGTAC
ATAATTTCAGCTTTCTGCCTCAGATTGACAAATGGCTTCAGGTAGCCTTAAAGGATGCCAGCTCTTGCTA
TAGACAAAAGAAATACGCCTTGGCAGCAGGACAGTTCAGAACAGCACTTGAGCTTTGCAGCAAAGGAGCA
GTTCTGGGAGAACCATTTGATGCACCTGCTGAAGATATAGCAAGCGTGGCAAGTTTCATTGAGACAAAGC
TTGTTACCTGTTATCTACGGATGAGGAAACCAGATCTTGCCCTGAATCATGCACACAGGAGCATTGTTTT
AAACCCAGCCTATTTCCGGAATCATCTTCGTCAAGCAACAGTGTTTAGATGTCTGGAGAGGTATTCAGAG
GCTGCCCGGAGTGCCATGATTGCTGACTACATGTTCTGGCTTGGTGGAGGAAGGGAAGAGAGCATAAGCA
AGCTCATCAAACTGTATTGGCAGGCCATGATTGAGGAAGCCATCACCAGAGCTGAATCTTTCTCGGTTAT
GTACACACCATTTGCGACAAAAATAAGAGCTGATAAAATAGAAAAAGTAAAAGATGCTTTCACAAAAACT
CATCCTGCATATGCAGAGTATATGTACACAGATCTTCAAGCACTCCACATGTTGCCTCAGACAGTTGACT
GGTCATCTTTTCCTCCCCAACAATATCTCTTGACTCTTGGGTTCAAAAACAAAGATGATGGAAAATTTTT
GGAAAAAATATCAAGCAGGAAGCTGCCGATATTCACAGAGCATAAAACACCTTTCGGTCTGACCAGAGAA
GATACAGTGAGGCAAATGGAGACAATGGGGAAGCGAATCTTGCCAATATTGGATTTTATTAGAAGCACCC
AATTGAATGGGAGTTTTCCTGCATCCTCAGGTGTGATGGAGAAGTTGCAATATGCCAGCCTCCTCAGCCA
GCTGCAGAGAGTAAAGGAGCAGTCCCAGGTGATTAATCAAGCAATGGCAGAGCTAGCAACCATTCCCTAC
CTACAGGACATCAGTCAACAGGAGGCAGAATTGCTGCAGTCACTAATGGCAGATGCTATGGACACCCTTG
AAGGAAGAAGAAACAATAATGAACGTGTGTGGAATATGATCCAAAAGGTTGGACAAATTGAAGATTTTCT
ATACCAATTAGAGGACAGTTTCTTAAAAACTAAAAAACTGAGAACTGCTCGAAGGCAAAAAACAAAAATG
AAGCGACTTCAAACTGTTCAGCAAAGGTAG

Translation (569 aa):
MDAGSSRSLENAVNRIYHDQLVPKINTSKKMSTLAHPPNILEMSQEIKKNCGGKQVEITLERTKMTKGIK
EKQSNDLEKAAFKRKAEGEEKPTRKKQAKITELDNQLITMPLPHIPLKNIMDVEMKLVYIDEMGVRYEFV
ESFMSTGSQPTCQAAEIVDPLSVHNFSFLPQIDKWLQVALKDASSCYRQKKYALAAGQFRTALELCSKGA
VLGEPFDAPAEDIASVASFIETKLVTCYLRMRKPDLALNHAHRSIVLNPAYFRNHLRQATVFRCLERYSE
AARSAMIADYMFWLGGGREESISKLIKLYWQAMIEEAITRAESFSVMYTPFATKIRADKIEKVKDAFTKT
HPAYAEYMYTDLQALHMLPQTVDWSSFPPQQYLLTLGFKNKDDGKFLEKISSRKLPIFTEHKTPFGLTRE
DTVRQMETMGKRILPILDFIRSTQLNGSFPASSGVMEKLQYASLLSQLQRVKEQSQVINQAMAELATIPY
LQDISQQEAELLQSLMADAMDTLEGRRNNNERVWNMIQKVGQIEDFLYQLEDSFLKTKKLRTARRQKTKM
KRLQTVQQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH