NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27474.1 Public Mus musculus 15 Deptor 23 108 98 CCDS HistoryNCBI Gene:97998Re-query CCDS DB by CCDS ID:27474.1Re-query CCDS DB by GeneID:97998See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096433.9 ENSMUSP00000094167.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096433.9Link to Ensembl Protein Viewer:ENSMUSP00000094167.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096433Re-query CCDS DB by Protein ID:ENSMUSP00000094167
Original member NCBI NM_145470.3 NP_663445.2 Updated not alive Link to Nucleotide Sequence:NM_145470.3Link to Protein Sequence:NP_663445.2Re-query CCDS DB by Nucleotide ID:NM_145470Re-query CCDS DB by Protein ID:NP_663445
Current member NCBI NM_145470.4 NP_663445.2 Accepted alive Link to Nucleotide Sequence:NM_145470.4Link to Protein Sequence:NP_663445.2Re-query CCDS DB by Nucleotide ID:NM_145470Re-query CCDS DB by Protein ID:NP_663445Link to BLAST:NP_663445.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663445.2 409 Q570Y9-1 409 100% 0 0

Chromosomal Locations for CCDS 27474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55112498 55112619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55149341 55149519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55151788 55151911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55180865 55181043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55208731 55208916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55212192 55212326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55215488 55215558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55218169 55218273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55252007 55252135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGAAGAGGGCAGCAGCGGCGGCAGTGGTAGCAGCGACAGCAACGCCGGCGGGAGCGGCGGGGTGCAGC
AGAGAGAGCTGGAACGCATGGCTGAAGTCCTAGTTACGGGAGAGCAGCTCCGGCTGCGGCTCCATGAAGA
AAAGGTTATTAAAGATAGACGGCACCATCTCAAAACCTACCCAAACTGCTTTGTTGCAAAAGAGCTGATT
GACTGGCTCATTGAACATAAGGAGGCCTCTGACCGAGAGACGGCGATAAAACTCATGCAGAAATTAGCCG
ACCGGGGCATCATTCATCACGTGTGTGATGAGCACAAGGAATTCAAGGATGTAAAACTCTTCTACCGCTT
TAGGAAGGATGATGGGACCTTTGCACTGGACAGTGAGGTGAAGGCCTTCATGAGAGGACAGAGGCTCTAT
GAAAAACTGATGAGCCCTGAAACTACACTCCTCCAGCCTAGAGAGGAGGAGGGGGTGAAGTATGAGCGGA
CCTTCATGGCATCCGAATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGA
GCAGCTTTGCCACCGGCTTATGGACCATGGGATCATCCAGCATGTGTCTAACAAGCACCCGTTTGTGGAC
AGCAACCTCCTCTACCAGTTCAGAATGAACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAATGAGA
CGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCAGAGCCACGACAGTCGGAA
ATCTACCAGCTTTATGTCAGTCAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCCGTGCGGAGGAGCAGC
ATGAGCAGCTGCGGCAGCAGTGGCTACTTCAGCAGCAGCCCCACACTCAGCAGCAGCCCCCCTGTGCTCT
GCAACCCCAAATCTGTGCTGAAGAGACCTGTCACTTCTGAGGAACTCTTGACTCCGGGGGCTCCGTACGC
AAGGAAGACATTCACGATTGTTGGTGACGCAGTTGGCTGGGGCTTTGTGGTACGAGGAAGTAAACCATGC
CACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGCTGCAGGGATGAAGGTCTGTCAGTTTGTCGTCT
CTGTCAATGGCCTCAACGTGCTGAATGTAGACTACCGCACCGTGAGCAATCTGATTCTGACAGGCCCAAG
GACAATTGTCATGGAAGTCATGGAGGAGTTGGACTGCTGA

Translation (409 aa):
MEEGSSGGSGSSDSNAGGSGGVQQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTYPNCFVAKELI
DWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKDDGTFALDSEVKAFMRGQRLY
EKLMSPETTLLQPREEEGVKYERTFMASEFLDWLVQEGEATTRKEAEQLCHRLMDHGIIQHVSNKHPFVD
SNLLYQFRMNFRRRRRLMELLNETSPSSQETHDSPFCLRKQSHDSRKSTSFMSVSPSKEIKIVSAVRRSS
MSSCGSSGYFSSSPTLSSSPPVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPC
HIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLNVDYRTVSNLILTGPRTIVMEVMEELDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH