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Report for CCDS8450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8450.1 Public Homo sapiens 11 SPA17 24 110 108 CCDS HistoryNCBI Gene:53340Re-query CCDS DB by CCDS ID:8450.1Re-query CCDS DB by GeneID:53340See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8450.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227135.7 ENSP00000227135.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227135.7Link to Ensembl Protein Viewer:ENSP00000227135.2Re-query CCDS DB by Nucleotide ID:ENST00000227135Re-query CCDS DB by Protein ID:ENSP00000227135
Original member Current member EBI ENST00000532692.1 ENSP00000432305.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532692.1Link to Ensembl Protein Viewer:ENSP00000432305.1Re-query CCDS DB by Nucleotide ID:ENST00000532692Re-query CCDS DB by Protein ID:ENSP00000432305
Original member Current member NCBI NM_017425.4 NP_059121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017425.4Link to Protein Sequence:NP_059121.1Re-query CCDS DB by Nucleotide ID:NM_017425Re-query CCDS DB by Protein ID:NP_059121Link to BLAST:NP_059121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059121.1 151 Q15506 151 100% 0 0

Chromosomal Locations for CCDS 8450.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124675265 124675418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124681389 124681459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124691696 124691782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124694303 124694446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGTCGATTCCATTCTCCAACACCCACTACCGAATTCCACAAGGATTTGGGAATCTTCTTGAAGGGCTGA
CACGCGAGATTCTGAGAGAGCAACCGGACAATATACCAGCTTTTGCAGCAGCCTATTTTGAGAGCCTTCT
AGAGAAAAGAGAGAAAACCAACTTTGATCCAGCAGAATGGGGGAGTAAGGTAGAAGACCGCTTCTATAAC
AATCATGCATTCGAGGAGCAAGAACCACCTGAGAAAAGTGATCCTAAACAAGAAGAGTCTCAGATATCTG
GGAAGGAGGAAGAGACATCAGTCACCATCTTAGACTCTTCTGAGGAAGATAAGGAAAAAGAAGAGGTTGC
TGCTGTCAAAATCCAAGCTGCCTTCCGGGGACACATAGCCAGAGAGGAGGCAAAGAAAATGAAAACAAAT
AGTCTTCAAAATGAGGAAAAAGAGGAAAACAAGTGA

Translation (151 aa):
MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIPAFAAAYFESLLEKREKTNFDPAEWGSKVEDRFYN
NHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVKIQAAFRGHIAREEAKKMKTN
SLQNEEKEENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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