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Report for CCDS3094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3094.1 Public Homo sapiens 3 SOX14 24 110 108 CCDS HistoryNCBI Gene:8403Re-query CCDS DB by CCDS ID:3094.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3094.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306087.3 ENSP00000305343.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306087.3Link to Ensembl Protein Viewer:ENSP00000305343.1Re-query CCDS DB by Nucleotide ID:ENST00000306087Re-query CCDS DB by Protein ID:ENSP00000305343
Original member Current member NCBI NM_004189.4 NP_004180.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004189.4Link to Protein Sequence:NP_004180.1Re-query CCDS DB by Nucleotide ID:NM_004189Re-query CCDS DB by Protein ID:NP_004180Link to BLAST:NP_004180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004180.1 240 O95416 240 100% 0 0

Chromosomal Locations for CCDS 3094.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 137764785 137765507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTCCAAACCTTCAGACCACATCAAGCGGCCCATGAACGCCTTCATGGTATGGTCCCGGGGCCAGCGGC
GCAAGATGGCCCAGGAAAACCCCAAGATGCACAACTCGGAGATCAGCAAACGCCTAGGTGCCGAATGGAA
GCTTCTGTCCGAGGCAGAGAAGCGGCCATACATCGATGAAGCCAAGCGGCTACGCGCCCAGCACATGAAG
GAGCACCCTGACTACAAGTACCGACCTCGGCGCAAGCCCAAGAACCTGCTCAAGAAGGACAGGTATGTCT
TCCCCTTGCCCTACCTGGGCGACACGGACCCGCTCAAGGCGGCTGGCCTGCCCGTGGGGGCCTCCGACGG
CCTCCTGAGCGCGCCCGAGAAAGCCCGGGCCTTCTTGCCGCCGGCCTCGGCGCCCTACTCCCTGCTGGAC
CCCGCGCAGTTTAGCTCGAGCGCCATCCAGAAGATGGGCGAAGTGCCCCACACCTTGGCTACCGGCGCTC
TGCCCTACGCGTCCACCCTGGGCTACCAGAACGGCGCCTTCGGCAGCCTCAGCTGCCCCAGCCAGCACAC
GCACACGCACCCGTCCCCCACCAACCCTGGCTACGTGGTGCCCTGTAACTGTACCGCCTGGTCTGCCTCC
ACCCTGCAGCCCCCCGTCGCCTACATCCTCTTCCCAGGCATGACCAAGACTGGCATAGACCCTTATTCGT
CAGCCCACGCTACGGCCATGTAA

Translation (240 aa):
MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK
EHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLD
PAQFSSSAIQKMGEVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSPTNPGYVVPCNCTAWSAS
TLQPPVAYILFPGMTKTGIDPYSSAHATAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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