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Report for CCDS46392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46392.1 Public Homo sapiens 2 ZC3H8 24 110 108 CCDS HistoryNCBI Gene:84524Re-query CCDS DB by CCDS ID:46392.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409573.7 ENSP00000386488.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409573.7Link to Ensembl Protein Viewer:ENSP00000386488.1Re-query CCDS DB by Nucleotide ID:ENST00000409573Re-query CCDS DB by Protein ID:ENSP00000386488
Original member Current member NCBI NM_032494.3 NP_115883.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032494.3Link to Protein Sequence:NP_115883.2Re-query CCDS DB by Nucleotide ID:NM_032494Re-query CCDS DB by Protein ID:NP_115883Link to BLAST:NP_115883.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115883.2 291 Q8N5P1 291 100% 0 0

Chromosomal Locations for CCDS 46392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112230918 112230950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112231838 112231947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112233260 112233371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112234120 112234236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112236562 112236695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112238315 112238528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112250191 112250272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112254908 112254981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGATTTTGAGAATCTTTTCTCAAAACCCCCCAACCCGGCCCTCGGCAAAACGGCCACGGACTCTGACG
AAAGAATCGATGATGAAATAGATACAGAAGTTGAAGAAACACAAGAAGAGAAAATTAAACTGGAGTGCGA
GCAAATTCCCAAAAAATTTAGACACTCTGCAATATCACCAAAAAGTTCGCTGCATAGAAAATCAAGAAGT
AAGGACTATGATGTATATAGTGATAATGATATCTGCAGTCAGGAATCAGAAGATAATTTTGCCAAAGAGC
TTCAACAGTACATACAAGCCAGAGAAATGGCAAATGCTGCTCAACCTGAAGAATCTACAAAGAAAGAAGG
AGTAAAAGATACCCCACAGGCTGCTAAACAAAAAAATAAAAATCTTAAAGCTGGTCACAAGAATGGCAAA
CAGAAGAAAATGAAGCGAAAATGGCCTGGCCCTGGAAACAAAGGATCAAATGCTTTGCTGAGGAACAGCG
GCTCACAGGAAGAGGATGGTAAACCTAAAGAGAAGCAGCAGCATTTGAGTCAGGCATTCATCAACCAACA
TACAGTGGAACGCAAGGGAAAACAAATTTGTAAATATTTTCTTGAAAGGAAATGTATTAAGGGAGACCAG
TGTAAATTTGATCATGATGCAGAGATAGAAAAGAAAAAGGAAATGTGTAAGTTTTATGTACAAGGATATT
GTACCAGAGGTGAAAACTGTCTGTATTTGCATAATGAATATCCTTGTAAGTTTTACCATACAGGAACAAA
ATGTTATCAGGGAGAATACTGCAAGTTTTCTCATGCTCCACTGACTCCTGAAACACAAGAATTGTTGGCT
AAAGTTTTGGATACTGAAAAGAAGTCATGTAAATAA

Translation (291 aa):
MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISPKSSLHRKSRS
KDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGK
QKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQICKYFLERKCIKGDQ
CKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLA
KVLDTEKKSCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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