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Report for CCDS43336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43336.1 Public Homo sapiens 5 SPZ1 24 110 108 CCDS HistoryNCBI Gene:84654Re-query CCDS DB by CCDS ID:43336.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296739.6 ENSP00000369611.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296739.6Link to Ensembl Protein Viewer:ENSP00000369611.3Re-query CCDS DB by Nucleotide ID:ENST00000296739Re-query CCDS DB by Protein ID:ENSP00000369611
Original member Current member NCBI NM_032567.4 NP_115956.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032567.4Link to Protein Sequence:NP_115956.3Re-query CCDS DB by Nucleotide ID:NM_032567Re-query CCDS DB by Protein ID:NP_115956Link to BLAST:NP_115956.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115956.3 430 Q9BXG8 430 100% 0 0

Chromosomal Locations for CCDS 43336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 80320216 80321508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCCAGCTCTGCTAAGTCAGCTGAGATGCCCACCATCTCCAAAACCGTTAACCCTACTCCTGATCCTC
ATCAAGAATATCTGGACCCTAGGATTACCATTGCCTTATTCGAAATTGGATCACATTCCCCTTCCTCCTG
GGGCTCTCTCCCTTTCCTAAAGAATAGCAGCCATCAAGTTACAGAACAACAGACTGCACAGAAGTTTAAC
AATCTCTTAAAAGAAATTAAAGATATTCTTAAAAATATGGCAGGTTTTGAAGAGAAGATCACAGAAGCAA
AAGAACTTTTTGAGGAAACCAATATTACTGAGGATGTGTCAGCCCACAAAGAAAATATCAGAGGACTTGA
CAAAATCAATGAAATGTTATCAACAAACCTGCCTGTTAGTTTAGCCCCAGAGAAAGAAGACAATGAAAAG
AAACAGGAGATGATATTGGAAACCAATATTACTGAGGATGTGTCAGCCCACAAAGAAAATATCAGAGGAC
TTGACAAAATCAATGAAATGTTATCAACAAACCTGCCTGTTAGTTTAGCCCCAGAGAAAGAAGACAATGA
AAAGAAACAGCAGATGATAATGGAAAACCAGAACTCTGAGAACACCGCACAAGTTTTTGCAAGAGATTTG
GTAAATCGTTTAGAAGAAAAAAAAGTCCTTAACGAAACTCAACAAAGTCAGGAAAAAGCAAAAAACAGAC
TTAATGTTCAAGAAGAAACTATGAAAATTAGGAACAACATGGAGCAGTTACTACAGGAAGCAGAACACTG
GAGTAAACAACATACTGAGCTCAGTAAACTGATAAAATCCTATCAGAAATCTCAGAAAGACATAAGTGAA
ACTCTTGGAAATAATGGAGTCGGTTTCCAAACCCAGCCAAATAATGAAGTGTCGGCTAAGCATGAGCTGG
AGGAACAGGTGAAGAAACTGAGCCATGACACCTATTCATTGCAGTTGATGGCAGCTTTGCTAGAGAATGA
ATGCCAAATCTTACAGCAGAGAGTAGAGATTCTCAAGGAACTCCATCATCAGAAACAGGGAACTCTGCAA
GAGAAGCCAATTCAGATAAACTATAAACAGGACAAGAAAAATCAGAAGCCATCAGAAGCAAAGAAAGTAG
AAATGTATAAGCAGAACAAGCAAGCAATGAAGGGTACATTTTGGAAAAAAGACAGATCCTGTAGAAGCCT
GGATGTTTGTCTTAATAAGAAAGCTTGCAATACCCAGTTCAATATTCATGTTGCAAGAAAAGCTCTTAGG
GGAAAAATGAGGTCAGCTAGCAGCCTAAGATAG

Translation (430 aa):
MASSAKSAEMPTISKTVNPTPDPHQEYLDPRITIALFEIGSHSPSSWGSLPFLKNSSHQVTEQQTAQKFN
NLLKEIKDILKNMAGFEEKITEAKELFEETNITEDVSAHKENIRGLDKINEMLSTNLPVSLAPEKEDNEK
KQEMILETNITEDVSAHKENIRGLDKINEMLSTNLPVSLAPEKEDNEKKQQMIMENQNSENTAQVFARDL
VNRLEEKKVLNETQQSQEKAKNRLNVQEETMKIRNNMEQLLQEAEHWSKQHTELSKLIKSYQKSQKDISE
TLGNNGVGFQTQPNNEVSAKHELEEQVKKLSHDTYSLQLMAALLENECQILQQRVEILKELHHQKQGTLQ
EKPIQINYKQDKKNQKPSEAKKVEMYKQNKQAMKGTFWKKDRSCRSLDVCLNKKACNTQFNIHVARKALR
GKMRSASSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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