NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8448.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8448.2 Public Homo sapiens 11 TBRG1 24 110 108 CCDS HistoryNCBI Gene:84897Re-query CCDS DB by CCDS ID:8448.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 8448.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in the extension of the N-terminus to one that is better supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8448.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441174.8 ENSP00000409016.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441174.8Link to Ensembl Protein Viewer:ENSP00000409016.3Re-query CCDS DB by Nucleotide ID:ENST00000441174Re-query CCDS DB by Protein ID:ENSP00000409016
Original member Current member NCBI NM_032811.3 NP_116200.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032811.3Link to Protein Sequence:NP_116200.2Re-query CCDS DB by Nucleotide ID:NM_032811Re-query CCDS DB by Protein ID:NP_116200Link to BLAST:NP_116200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116200.2 411 Q3YBR2-1 411 100% 0 0

Chromosomal Locations for CCDS 8448.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124623084 124623233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124624931 124625001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124625671 124625903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124626473 124626609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124626904 124627050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124630388 124630485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124630745 124630855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124631275 124631417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124632093 124632238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGAGCCTGCTGGACGGCCTCGCTTCCTCGCCGCGGGCTCCGCTGCAGTCCAGCAAGGCCAGGATGAAAA
AGCTCCCGAAGAAGAGCCAGAATGAGAAGTACCGGCTGAAGTACCTGCGGCTGCGCAAAGCGGCCAAGGC
CACGGTGTTTGAAAATGCTGCTATTTGTGATGAAATTGCTCGTCTTGAGGAAAAATTTCTTAAAGCAAAA
GAAGAAAGAAGGTACTTGCTAAAGAAGCTCCTCCAGCTTCAGGCTCTAACTGAAGGGGAAGTACAGGCTG
CAGCTCCTTCCCACAGTTCCAGTTTGCCCCTGACTTATGGTGTGGCCAGCTCTGTGGGAACTATACAGGG
AGCTGGGCCTATTTCAGGGCCCAGCACTGGGGCTGAGGAACCATTTGGGAAGAAAACTAAGAAGGAGAAA
AAAGAAAAAGGCAAAGAGAACAACAAACTGGAAGTTCTGAAGAAAACATGCAAGAAAAAGAAAATGGCGG
GAGGTGCTCGCAAGCTGGTTCAGCCCATTGCCCTGGATCCCTCAGGACGGCCTGTGTTCCCCATCGGACT
AGGGGGTCTAACAGTATATAGCCTGGGGGAGATCATCACCGACCGACCTGGCTTTCATGATGAGAGTGCC
ATCTACCCCGTGGGCTATTGCAGTACTCGAATATATGCCAGCATGAAGTGCCCAGACCAGAAGTGTCTAT
ATACCTGTCAGATCAAGGATGGTGGTGTGCAGCCTCAGTTTGAAATTGTTCCTGAAGATGACCCCCAGAA
TGCCATTGTCAGCTCTTCTGCAGATGCTTGTCATGCAGAACTGCTCAGGACTATAAGCACTACTATGGGG
AAACTAATGCCTAACCTGCTTCCAGCTGGAGCTGACTTTTTTGGATTTTCTCATCCAGCCATCCACAACC
TGATCCAGAGCTGTCCAGGAGCTCGAAAATGCATCAATTACCAGTGGGTGAAATTTGATGTGTGCAAACC
TGGAGATGGGCAGCTACCTGAGGGGCTGCCGGAGAATGATGCAGCTATGAGCTTTGAAGCCTTTCAGAGA
CAGATCTTTGATGAAGATCAGAATGATCCCCTTCTGCCAGGATCCTTGGACCTCCCAGAGCTTCAGCCTG
CAGCCTTTGTGTCTTCTTACCAGCCCATGTACCTGACACATGAACCCTTGGTAGATACTCACCTGCAGCA
CTTGAAGTCTCCATCACAGGGTAGCCCAATTCAGTCTTCAGATTGA

Translation (411 aa):
MSLLDGLASSPRAPLQSSKARMKKLPKKSQNEKYRLKYLRLRKAAKATVFENAAICDEIARLEEKFLKAK
EERRYLLKKLLQLQALTEGEVQAAAPSHSSSLPLTYGVASSVGTIQGAGPISGPSTGAEEPFGKKTKKEK
KEKGKENNKLEVLKKTCKKKKMAGGARKLVQPIALDPSGRPVFPIGLGGLTVYSLGEIITDRPGFHDESA
IYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGVQPQFEIVPEDDPQNAIVSSSADACHAELLRTISTTMG
KLMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDVCKPGDGQLPEGLPENDAAMSFEAFQR
QIFDEDQNDPLLPGSLDLPELQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH