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Report for CCDS10645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10645.1 Public Homo sapiens 16 NFATC2IP 24 110 108 CCDS HistoryNCBI Gene:84901Re-query CCDS DB by CCDS ID:10645.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320805.9 ENSP00000324792.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320805.9Link to Ensembl Protein Viewer:ENSP00000324792.4Re-query CCDS DB by Nucleotide ID:ENST00000320805Re-query CCDS DB by Protein ID:ENSP00000324792
Original member Current member NCBI NM_032815.4 NP_116204.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032815.4Link to Protein Sequence:NP_116204.3Re-query CCDS DB by Nucleotide ID:NM_032815Re-query CCDS DB by Protein ID:NP_116204Link to BLAST:NP_116204.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116204.3 419 Q8NCF5-1 419 100% 0 0

Chromosomal Locations for CCDS 10645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28951012 28951398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28952132 28952204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28954565 28954682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28955978 28956058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28956151 28956337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28958717 28958861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28958991 28959100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28963705 28963863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCGGAGCCTGTGGGGAAGCGGGGCCGCTGGTCCGGAGGTAGCGGTGCCGGCCGAGGGGGTCGGGGCG
GCTGGGGCGGTCGGGGCCGGCGTCCTCGGGCCCAGCGGTCTCCATCCCGGGGCACGCTGGACGTAGTGTC
TGTGGACTTGGTCACCGACAGCGATGAGGAAATTCTGGAGGTCGCCACCGCTCGCGGTGCCGCGGACGAG
GTTGAGGTGGAGCCCCCGGAGCCCCCGGGGCCGGTCGCGTCCCGGGATAACAGCAACAGTGACAGCGAAG
GGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCC
GGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGAT
CTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAGAGGCAGAGCTGGCAGATTCGAGTGGTCTCT
ACCATGAGGGCTCCCCATCACCAGGCTCTCCCTGGAAGACAAAGCTGAGGACTAAGGATAAAGAAGAGAA
GAAAAAGACAGAGTTTCTGGATCTGGACAACTCTCCTCTGTCCCCACCTTCACCAAGGACCAAAAGCAGA
ACGCATACTCGGGCACTCAAGAAGTTAAGTGAGGTGAACAAGCGCCTCCAGGATCTCCGTTCCTGTCTGA
GCCCCAAGCCACCTCAGGGTCAAGAGCAACAGGGCCAAGAGGATGAAGTGGTCTTGGTGGAAGGGCCCAC
CCTCCCAGAGACCCCCCGACTCTTCCCACTCAAAATCCGTTGCCGGGCTGACCTGGTCAGATTGCCCCTC
AGGATGTCGGAGCCCCTGCAGAGTGTGGTGGACCACATGGCCACCCACCTTGGGGTGTCCCCAAGCAGGA
TCCTTTTGCTTTTTGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCCTAAAGCTCGGAGTGGC
TGACATCATTGACTGTGTGGTACTAACAAGTTCTCCAGAGGCCACAGAGACGTCCCAACAGCTCCAGCTC
CGGGTGCAGGGAAAGGAGAAACACCAGACACTGGAAGTCTCACTGTCTCGAGATTCCCCTCTAAAGACCC
TCATGTCCCACTATGAGGAGGCCATGGGACTGTCGGGACGGAAGCTCTCCTTCTTCTTTGATGGGACAAA
GCTTTCAGGCAGGGAGCTGCCAGCTGACCTGGGCATGGAATCTGGGGACCTCATTGAGGTCTGGGGCTGA

Translation (419 aa):
MAEPVGKRGRWSGGSGAGRGGRGGWGGRGRRPRAQRSPSRGTLDVVSVDLVTDSDEEILEVATARGAADE
VEVEPPEPPGPVASRDNSNSDSEGEDRRPAGPPREPVRRRRRLVLDPGEAPLVPVYSGKVKSSLRLIPDD
LSLLKLYPPGDEEEAELADSSGLYHEGSPSPGSPWKTKLRTKDKEEKKKTEFLDLDNSPLSPPSPRTKSR
THTRALKKLSEVNKRLQDLRSCLSPKPPQGQEQQGQEDEVVLVEGPTLPETPRLFPLKIRCRADLVRLPL
RMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTSSPEATETSQQLQL
RVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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