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Report for CCDS6429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6429.1 Public Homo sapiens 8 PPP1R16A 24 110 108 CCDS HistoryNCBI Gene:84988Re-query CCDS DB by CCDS ID:6429.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292539.8 ENSP00000292539.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292539.8Link to Ensembl Protein Viewer:ENSP00000292539.4Re-query CCDS DB by Nucleotide ID:ENST00000292539Re-query CCDS DB by Protein ID:ENSP00000292539
Original member Current member EBI ENST00000435887.2 ENSP00000391126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435887.2Link to Ensembl Protein Viewer:ENSP00000391126.1Re-query CCDS DB by Nucleotide ID:ENST00000435887Re-query CCDS DB by Protein ID:ENSP00000391126
Original member Current member NCBI NM_001329442.2 NP_001316371.1 Accepted alive Link to Nucleotide Sequence:NM_001329442.2Link to Protein Sequence:NP_001316371.1Re-query CCDS DB by Nucleotide ID:NM_001329442Re-query CCDS DB by Protein ID:NP_001316371Link to BLAST:NP_001316371.1
Original member Current member NCBI NM_001329443.2 NP_001316372.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001329443.2Link to Protein Sequence:NP_001316372.1Re-query CCDS DB by Nucleotide ID:NM_001329443Re-query CCDS DB by Protein ID:NP_001316372Link to BLAST:NP_001316372.1
Original member Current member NCBI NM_001329444.2 NP_001316373.1 Accepted alive Link to Nucleotide Sequence:NM_001329444.2Link to Protein Sequence:NP_001316373.1Re-query CCDS DB by Nucleotide ID:NM_001329444Re-query CCDS DB by Protein ID:NP_001316373Link to BLAST:NP_001316373.1
Original member Current member NCBI NM_001329445.2 NP_001316374.1 Accepted alive Link to Nucleotide Sequence:NM_001329445.2Link to Protein Sequence:NP_001316374.1Re-query CCDS DB by Nucleotide ID:NM_001329445Re-query CCDS DB by Protein ID:NP_001316374Link to BLAST:NP_001316374.1
Original member Current member NCBI NM_032902.7 NP_116291.1 Accepted alive Link to Nucleotide Sequence:NM_032902.7Link to Protein Sequence:NP_116291.1Re-query CCDS DB by Nucleotide ID:NM_032902Re-query CCDS DB by Protein ID:NP_116291Link to BLAST:NP_116291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316371.1 528 Q96I34 528 100% 0 0
NP_001316372.1 528 Q96I34 528 100% 0 0
NP_001316373.1 528 Q96I34 528 100% 0 0
NP_001316374.1 528 Q96I34 528 100% 0 0
NP_116291.1 528 Q96I34 528 100% 0 0

Chromosomal Locations for CCDS 6429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144497195 144497453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144498770 144498840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144498916 144499061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144500096 144500199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144500267 144500391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144500487 144500612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144500686 144500761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144500842 144500971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144501129 144501294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144501520 144501903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCCGAGCACCTGGAGCTGCTGGCAGAGATGCCCATGGTGGGCAGGATGAGCACACAGGAGCGGCTGA
AGCATGCCCAGAAGCGGCGCGCCCAGCAGGTGAAGATGTGGGCCCAGGCTGAGAAGGAGGCCCAGGGCAA
GAAGGGTCCTGGGGAGCGTCCCCGGAAGGAGGCAGCCAGCCAAGGGCTCCTGAAGCAGGTCCTCTTCCCT
CCCAGTGTTGTCCTTCTGGAGGCCGCTGCCCGAAATGACCTGGAAGAAGTCCGCCAGTTCCTTGGGAGTG
GGGTCAGCCCTGACTTGGCCAACGAGGACGGCCTGACGGCCCTGCACCAGTGCTGCATTGATGATTTCCG
AGAGATGGTGCAGCAGCTCCTGGAGGCTGGGGCCAACATCAATGCCTGTGACAGTGAGTGCTGGACGCCT
CTGCATGCTGCGGCCACCTGCGGCCACCTGCACCTGGTGGAGCTGCTCATCGCCAGTGGCGCCAATCTCC
TGGCGGTCAACACCGACGGGAACATGCCCTATGACCTGTGTGATGATGAGCAGACGCTGGACTGCCTGGA
GACTGCCATGGCCGACCGTGGCATCACCCAGGACAGCATCGAGGCCGCCCGGGCCGTGCCAGAACTGCGC
ATGCTGGACGACATCCGGAGCCGGCTGCAGGCCGGGGCAGACCTCCATGCCCCCCTGGACCACGGGGCCA
CGCTGCTGCACGTCGCAGCCGCCAACGGGTTCAGCGAGGCGGCTGCCCTGCTGCTGGAACACCGAGCCAG
CCTGAGCGCTAAGGACCAAGACGGCTGGGAGCCGCTGCACGCCGCGGCCTACTGGGGCCAGGTGCCCCTG
GTGGAGCTGCTCGTGGCGCACGGGGCCGACCTGAACGCAAAGTCCCTGATGGACGAGACGCCCCTTGATG
TGTGCGGGGACGAGGAGGTGCGGGCCAAGCTGCTGGAGCTGAAGCACAAGCACGACGCCCTCCTGCGCGC
CCAGAGCCGCCAGCGCTCCTTGCTGCGCCGCCGCACCTCCAGCGCCGGCAGCCGCGGGAAGGTGGTGAGG
CGGGTGAGCCTAACCCAGCGCACCGACCTGTACCGCAAGCAGCACGCCCAGGAGGCCATCGTGTGGCAAC
AGCCGCCGCCCACCAGCCCGGAGCCGCCCGAGGACAACGATGACCGCCAGACAGGCGCAGAGCTCAGGCC
GCCGCCCCCGGAGGAGGACAACCCCGAAGTGGTCAGGCCGCACAATGGCCGAGTAGGGGGCTCCCCAGTG
CGGCATCTATACTCCAAGCGACTAGACCGGAGTGTCTCCTACCAGCTGAGCCCCCTGGACAGCACCACCC
CCCACACCCTGGTCCACGACAAGGCCCACCACACCCTGGCTGACCTGAAGCGCCAGCGAGCTGCTGCCAA
GCTGCAGCGACCCCCACCTGAGGGGCCCGAGAGCCCTGAGACAGCTGAGCCTGGCCTGCCTGGTGACACG
GTGACCCCCCAGCCTGACTGTGGCTTCAGGGCAGGCGGGGACCCACCCCTGCTCAAGCTCACAGCCCCGG
CGGTGGAGGCTCCCGTGGAGAGGAGGCCGTGCTGCCTGCTCATGTGA

Translation (528 aa):
MAEHLELLAEMPMVGRMSTQERLKHAQKRRAQQVKMWAQAEKEAQGKKGPGERPRKEAASQGLLKQVLFP
PSVVLLEAAARNDLEEVRQFLGSGVSPDLANEDGLTALHQCCIDDFREMVQQLLEAGANINACDSECWTP
LHAAATCGHLHLVELLIASGANLLAVNTDGNMPYDLCDDEQTLDCLETAMADRGITQDSIEAARAVPELR
MLDDIRSRLQAGADLHAPLDHGATLLHVAAANGFSEAAALLLEHRASLSAKDQDGWEPLHAAAYWGQVPL
VELLVAHGADLNAKSLMDETPLDVCGDEEVRAKLLELKHKHDALLRAQSRQRSLLRRRTSSAGSRGKVVR
RVSLTQRTDLYRKQHAQEAIVWQQPPPTSPEPPEDNDDRQTGAELRPPPPEEDNPEVVRPHNGRVGGSPV
RHLYSKRLDRSVSYQLSPLDSTTPHTLVHDKAHHTLADLKRQRAAAKLQRPPPEGPESPETAEPGLPGDT
VTPQPDCGFRAGGDPPLLKLTAPAVEAPVERRPCCLLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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