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Report for CCDS59512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59512.1 Public Homo sapiens 8 FAM86B1 24 110 108 CCDS HistoryNCBI Gene:85002Re-query CCDS DB by CCDS ID:59512.1See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 59512.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred, but it is supported by the full-length paralogous transcript AY037162.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59512.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448228.7 ENSP00000407067.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448228.7Link to Ensembl Protein Viewer:ENSP00000407067.2Re-query CCDS DB by Nucleotide ID:ENST00000448228Re-query CCDS DB by Protein ID:ENSP00000407067
Original member Current member NCBI NM_001083537.4 NP_001077006.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083537.4Link to Protein Sequence:NP_001077006.1Re-query CCDS DB by Nucleotide ID:NM_001083537Re-query CCDS DB by Protein ID:NP_001077006Link to BLAST:NP_001077006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077006.1 296 Q8N7N1-1 296 100% 0 0

Chromosomal Locations for CCDS 59512.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12183606 12183706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12185376 12185525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12186352 12186617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12186700 12186833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12189808 12189888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12191779 12191841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12193975 12194070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCGCCCGAGGAGAACGCGGGGACCGAACTCTTGCTGCAGGGTTTTGAGCGCCGCTTCCTGGCGGTGC
GCACACTGCGCTCCTTCCCCTGGCAGAGCTTAGAGGCAAAGTTAAGAGACTCATCAGATTCTGAGCTGCT
GCGGGATATTTTGCAGAAGACTGTGAGGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTATGCC
TGGTGCTTTCTCTCAGAACTCATCAAAAAGTCCTCAGGAGGCTCAGTCACACTCTCCAAGAGCACAGCCA
TCATCTCCCACGGTACCACAGGCCTGGTCACATGGGATGCCGCCCTCTACCTTGCAGAATGGGCCATCGA
GAACCCGGCAGCCTTCATTAACAGGACTGTCCTAGAGCTTGGCAGTGGTGCCGGCCTCACAGGCCTTGCC
ATCTGCAAGATGTGCCGCCCCCGGGCATACATCTTCAGCGACCCTCACAGCCGGGTCCTCGAGCAGCTCC
GAGGGAATGTCCTTCTCAATGGCCTCTCATTAGAGGCAGACATCACTGGCAACTTAGACAGCCCCAGGGT
GACAGTGGCCCAGCTGGACTGGGACGTAGCAATGGTCCATCAGCTCTCTGCCTTCCAGCCAGATGTTGTC
ATTGCAGCAGACGTGCTGTATTGCCCAGAAGCCATCGTGTCGCTGGTCGGGGTCCTGCAGAGGCTGGCTG
CCTGCCGGGAGCACAAGCGGGCTCCTGAGGTCTACGTGGCCTTTACCGTCCGCAACCCAGAGACGTGCCA
GCTGTTCACCACCGAGCTAGGCCGGGATGGGATCAGATGGGAAGCGGAAGCTCATCATGACCAGAAACTG
TTTCCCTATGGAGAGCACTTGGAGATGGCAATGCTGAACCTCACACTGTAG

Translation (296 aa):
MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVCVKHPPSVKYA
WCFLSELIKKSSGGSVTLSKSTAIISHGTTGLVTWDAALYLAEWAIENPAAFINRTVLELGSGAGLTGLA
ICKMCRPRAYIFSDPHSRVLEQLRGNVLLNGLSLEADITGNLDSPRVTVAQLDWDVAMVHQLSAFQPDVV
IAADVLYCPEAIVSLVGVLQRLAACREHKRAPEVYVAFTVRNPETCQLFTTELGRDGIRWEAEAHHDQKL
FPYGEHLEMAMLNLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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