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Report for CCDS55202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55202.1 Public Homo sapiens 8 CNOT7 24 110 108 CCDS HistoryNCBI Gene:29883Re-query CCDS DB by CCDS ID:55202.1Re-query CCDS DB by GeneID:29883See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523917.5 ENSP00000429093.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523917.5Link to Ensembl Protein Viewer:ENSP00000429093.1Re-query CCDS DB by Nucleotide ID:ENST00000523917Re-query CCDS DB by Protein ID:ENSP00000429093
Original member Current member NCBI NM_001322087.2 NP_001309016.1 Accepted alive Link to Nucleotide Sequence:NM_001322087.2Link to Protein Sequence:NP_001309016.1Re-query CCDS DB by Nucleotide ID:NM_001322087Re-query CCDS DB by Protein ID:NP_001309016Link to BLAST:NP_001309016.1
Original member Current member NCBI NM_001322088.2 NP_001309017.1 Accepted alive Link to Nucleotide Sequence:NM_001322088.2Link to Protein Sequence:NP_001309017.1Re-query CCDS DB by Nucleotide ID:NM_001322088Re-query CCDS DB by Protein ID:NP_001309017Link to BLAST:NP_001309017.1
Original member Current member NCBI NM_001322089.2 NP_001309018.1 Accepted alive Link to Nucleotide Sequence:NM_001322089.2Link to Protein Sequence:NP_001309018.1Re-query CCDS DB by Nucleotide ID:NM_001322089Re-query CCDS DB by Protein ID:NP_001309018Link to BLAST:NP_001309018.1
Original member Current member NCBI NM_054026.4 NP_473367.2 Accepted alive Link to Nucleotide Sequence:NM_054026.4Link to Protein Sequence:NP_473367.2Re-query CCDS DB by Nucleotide ID:NM_054026Re-query CCDS DB by Protein ID:NP_473367Link to BLAST:NP_473367.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309016.1 244 Q9UIV1-2 244 100% 0 0
NP_001309017.1 244 Q9UIV1-2 244 100% 0 0
NP_001309018.1 244 Q9UIV1-2 244 100% 0 0
NP_473367.2 244 Q9UIV1-2 244 100% 0 0

Chromosomal Locations for CCDS 55202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 17232421 17232537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17234716 17234860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17237212 17237373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17242992 17243185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17245036 17245152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGCCAGCGGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGCAACTTGGATGAAGAGA
TGAAGAAAATTCGTCAAGTTATCCGAAAATATAATTACGTTGCTATGGACACCGAGTTTCCAGGTGTGGT
TGCAAGACCCATTGGAGAATTCAGGAGCAATGCTGACTATCAATACCAACTATTGCGGTGTAATGTAGAC
TTGTTAAAGATAATTCAGCTAGGACTGACATTTATGAATGAGCAAGGAGAATACCCTCCAGGAACTTCAA
CTTGGCAGTTTAATTTTAAATTTAATTTGACGGAGGACATGTATGCCCAGGACTCTATAGAGCTACTAAC
AACATCTGGTATCCAGTTTAAAAAACATGAGGAGGAAGGAATTGAAACCCAGTACTTTGCAGAACTTCTT
ATGACTTCTGGAGTGGTCCTCTGTGAAGGGGTCAAATGGTTGTCATTTCATAGCGGTTACGACTTTGGCT
ACTTAATCAAAATCCTAACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAGATCCTTCGATT
GTTTTTTCCTGTCATTTATGATGTGAAGTACCTCATGAAGAGCTGCAAAAATCTCAAAGGTGGATTACAG
GAGGTGGCAGAACAGTTAGAGCTGGAACGGATAGGACCACAACATCAGGCAGGATCTGATTCATTGCTCA
CAGGAATGGCCTTTTTCAAAATGAGAGAAGTATGA

Translation (244 aa):
MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD
LLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELL
MTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQ
EVAEQLELERIGPQHQAGSDSLLTGMAFFKMREV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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