CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS6802.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
6802.1 |
Public |
Homo sapiens |
9 |
COL27A1 |
24 |
110 |
108 |
|
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 6802.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENST00000356083.8 |
ENSP00000348385.3 |
MANE Select |
Accepted |
alive |
|
|
|
NCBI |
NM_032888.4 |
NP_116277.2 |
MANE Select |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_116277.2 |
1860 |
Q8IZC6-1 |
1860 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 6802.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5583 nt): ATGGGAGCGGGATCGGCGCGGGGGGCCCGAGGCACAGCGGCGGCGGCGGCGGCGCGCGGGGGGGGGTTTC TCTTCTCCTGGATCTTAGTCTCGTTTGCCTGTCACCTGGCCTCCACCCAAGGAGCTCCTGAAGATGTGGA CATCCTCCAGCGGCTGGGCCTCAGCTGGACGAAGGCCGGGAGCCCTGCACCCCCGGGAGTCATTCCTTTC CAGTCGGGCTTCATCTTTACGCAGCGGGCCCGGCTCCAGGCTCCCACGGGCACCGTCATTCCTGCCGCCT TGGGCACAGAGCTGGCACTGGTGCTGAGCCTCTGCTCCCACCGGGTGAACCATGCCTTCCTCTTCGCTGT CCGCAGCCAGAAACGCAAGCTGCAGCTGGGCCTGCAGTTCCTCCCCGGCAAGACGGTCGTCCACCTCGGG TCCCGGCGCTCAGTGGCCTTCGACCTCGACATGCACGACGGGCGCTGGCACCACCTGGCCCTCGAGCTCC GAGGCCGCACAGTCACTCTGGTGACTGCCTGCGGGCAGCGCCGGGTGCCTGTCCTGCTGCCTTTCCACAG GGACCCTGCACTCGACCCTGGGGGCTCCTTCCTCTTTGGGAAGATGAACCCGCATGCAGTCCAGTTTGAA GGTGCTCTCTGCCAGTTCAGTATCTACCCTGTGACGCAGGTCGCTCACAATTACTGTACCCACCTGAGGA AGCAGTGTGGACAGGCTGACACGTACCAGTCCCCACTGGGACCTCTCTTCTCCCAAGACTCTGGCAGACC TTTTACCTTCCAGTCCGACCTCGCCCTGCTAGGCCTGGAGAACTTGACCACTGCCACACCAGCCCTGGGG TCACTGCCAGCAGGCAGGGGACCCAGGGGGACTGTGGCACCCGCCACGCCCACCAAGCCCCAAAGGACTA GCCCCACAAACCCTCACCAGCATATGGCGGTGGGAGGCCCAGCCCAAACCCCGCTGCTACCTGCCAAGCT GTCAGCCAGTAACGCACTTGATCCCATGCTCCCAGCCTCTGTTGGCGGCTCTACCAGAACGCCTCGCCCT GCGGCCGCTCAACCATCACAGAAGATCACAGCCACCAAAATCCCCAAAAGCCTCCCTACCAAGCCTTCGG CCCCTTCTACTTCAATTGTGCCCATCAAAAGCCCCCATCCTACCCAGAAAACAGCTCCATCTTCATTTAC AAAGTCAGCCCTACCCACTCAGAAGCAAGTGCCACCTACTTCCCGTCCAGTTCCTGCCAGAGTCTCCCGT CCCGCAGAGAAGCCCATCCAGAGGAACCCGGGAATGCCCAGGCCCCCACCGCCCAGCACCCGGCCCCTAC CTCCTACCACCAGCTCCTCTAAAAAACCCATTCCCACACTAGCTCGGACTGAGGCCAAGATAACCAGCCA TGCCAGTAAGCCGGCCTCTGCCCGCACCAGCACCCACAAACCTCCCCCATTTACTGCTTTATCCTCATCT CCTGCCCCTACTCCTGGTTCTACCAGGAGTACTCGGCCACCAGCCACGATGGTACCTCCAACTTCGGGCA CCAGCACTCCCAGAACAGCACCTGCCGTCCCCACTCCTGGCTCAGCTCCCACTGGAAGCAAGAAGCCCAT TGGATCGGAAGCCTCAAAGAAAGCCGGACCCAAGAGCAGCCCCCGGAAGCCTGTCCCCCTCAGACCTGGG AAGGCAGCCAGGGATGTCCCCTTGAGCGATCTGACAACCAGGCCTAGCCCCAGACAGCCCCAGCCCAGTC AGCAGACCACCCCGGCCCTGGTATTGGCCCCGGCGCAATTCCTGTCCTCCAGCCCCCGGCCCACGAGCAG TGGCTATTCGATCTTCCACCTGGCAGGATCTACGCCTTTCCCTCTGCTGATGGGGCCTCCGGGACCCAAG GGAGACTGTGGCTTGCCGGGTCCCCCTGGGCTACCTGGGCTACCTGGAATCCCTGGTGCACGTGGGCCTC GGGGTCCTCCTGGGCCTTATGGAAATCCAGGTCTCCCCGGCCCTCCTGGAGCCAAAGGACAGAAAGGGGA CCCAGGGCTCTCACCAGGAAAGGCCCACGATGGGGCAAAGGGTGACATGGGCTTGCCTGGGCTCTCCGGG AATCCAGGACCTCCGGGACGAAAGGGACACAAGGGCTATCCTGGACCGGCAGGGCACCCCGGAGAACAGG GGCAGCCAGGACCTGAGGGCAGCCCAGGGGCCAAAGGTTACCCTGGCAGGCAGGGGTTACCTGGACCGGT AGGAGATCCCGGCCCCAAAGGCAGCAGGGGCTACATTGGGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCT GATGGAGAACGAGGCCTGCCTGGCGTTCCTGGCAAGAGGGGCAAGATGGGTATGCCGGGGTTTCCTGGAG TCTTTGGGGAAAGAGGCCCTCCTGGACTGGATGGAAATCCTGGAGAACTGGGCCTGCCAGGCCCCCCTGG AGTCCCCGGCCTCATTGGTGACTTAGGAGTGTTGGGTCCGATTGGCTACCCGGGACCCAAGGGCATGAAG GGACTGATGGGCAGCGTGGGGGAGCCCGGACTGAAAGGTGATAAGGGTGAACAAGGGGTTCCAGGTGTGT CAGGAGATCCCGGATTCCAAGGAGACAAGGGGAGCCAGGGGTTGCCAGGGTTCCCCGGTGCACGGGGGAA GCCAGGGCCTCTGGGCAAAGTCGGAGACAAAGGATCCATTGGGTTTCCCGGGCCCCCTGGACCCGAGGGA TTCCCAGGAGACATCGGCCCCCCTGGCGACAATGGCCCAGAAGGCATGAAGGGTAAGCCTGGAGCCCGAG GCCTGCCGGGACCCCGTGGGCAGCTGGGGCCCGAGGGAGATGAGGGACCCATGGGGCCGCCAGGGGCCCC TGGCTTGGAGGGTCAGCCTGGCAGGAAGGGGTTTCCTGGGAGGCCCGGCCTGGATGGCGTGAAGGGGGAA CCAGGGGATCCTGGTCGGCCGGGGCCTGTGGGAGAGCAGGGATTTATGGGATTCATTGGTCTGGTCGGGG AGCCAGGAATCGTGGGAGAAAAGGGTGATCGTGGCATGATGGGACCCCCAGGCGTGCCTGGACCCAAGGG GTCGATGGGTCATCCTGGAATGCCAGGTGGTATGGGGACCCCTGGAGAGCCTGGACCCCAGGGTCCTCCA GGATCTCGAGGCCCACCAGGCATGAGGGGAGCAAAGGGACGTCGGGGCCCCCGAGGACCGGACGGACCAG CTGGGGAGCAAGGGTCCAGGGGCCTGAAGGGCCCTCCAGGACCCCAGGGCAGACCGGGCCGGCCTGGACA GCAGGGTGTGGCTGGTGAGCGAGGCCACTTGGGCTCGAGAGGCTTTCCTGGCATCCCGGGTCCCTCAGGC CCCCCAGGCACCAAGGGCCTCCCAGGAGAACCGGGCCCTCAGGGACCCCAGGGGCCAATTGGGCCTCCAG GAGAGATGGGACCCAAGGGGCCGCCTGGTGCAGTGGGAGAACCGGGCCTTCCTGGGGAAGCCGGGATGAA GGGTGACCTTGGACCCCTGGGCACTCCTGGGGAGCAGGGCCTCATTGGGCAACGGGGAGAGCCAGGCCTT GAGGGTGACAGTGGCCCCATGGGACCTGATGGGCTGAAGGGGGACAGGGGAGACCCAGGGCCTGATGGAG AACATGGCGAGAAAGGCCAGGAAGGGCTGATGGGTGAGGACGGGCCCCCCGGCCCCCCTGGCGTCACTGG TGTCCGGGGTCCTGAAGGAAAATCAGGGAAGCAAGGCGAGAAGGGCCGCACTGGAGCCAAGGGTGCCAAG GGCTATCAAGGACAGCTGGGTGAGATGGGCGTCCCTGGAGACCCTGGACCCCCTGGCACTCCAGGCCCTA AAGGGTCCCGGGGCAGCCTGGGACCAACGGGTGCTCCGGGACGCATGGGGGCCCAAGGAGAACCGGGACT GGCTGGTTATGATGGACACAAAGGCATTGTGGGACCCCTTGGACCTCCTGGACCAAAAGGCGAAAAGGGG GAGCAGGGCGAGGACGGCAAGGCTGAGGGGCCCCCTGGGCCACCTGGAGATCGGGGCCCTGTGGGTGATC GAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACCCTGGACAGGAGGGTGTGCAAGGCCTCCGTGGAAA GCCAGGCCAGCAGGGCCAACCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCAAAGGATCGAAAGGC GCAGAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGTCCAGGGCCTGCAGG GGCTGCCAGGGCCCCGGGGCGTGGTGGGGAGACAGGGCCTCGAGGGCATCGCTGGACCAGATGGGCTTCC TGGCAGGGACGGGCAAGCAGGACAGCAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCATGGGCCCT GCTGGGAAGAGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCACAGGGACCCCCAGGATTCAAGGGTG AGAGTGGGTTACCCGGACAGCTGGGTCCCCCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCCCTGG AAACCAGGGGGAGCCTGGGTCCAAAGGCCAGCCGGGCGACTCTGGCGAGATGGGCTTCCCAGGAATGGCA GGTCTCTTCGGACCCAAGGGCCCGCCTGGAGACATTGGCTTCAAAGGCATCCAGGGCCCTCGGGGGCCAC CTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCCTCGGAATCCTGGGACCTTCGGGACTCCCGGGTCC GAAGGGTGACAAAGGCAGCCGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTCCCGGCCCCAGAGGG CGGCCCGGCCCCCCGGGTCCTCCAGGGGGTCCTATCCAATTGCAACAAGATGATCTTGGGGCAGCTTTCC AGACGTGGATGGACACCAGTGGAGCACTCAGGCCAGAGAGTTACAGCTATCCAGACCGGCTGGTGCTGGA CCAGGGAGGAGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTG GGCACCAAAGAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATGGTA CCTACTGGGTGGATCCAAACCTTGGCTGCTCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTCATGG TGGACAGACGTGTCTCAAGCCCATCACGGCCTCCAAGGTCGAGTTTGCCATCAGCCGGGTCCAGATGAAT TTCCTGCACCTGCTAAGCTCCGAGGTGACCCAGCACATCACCATCCACTGCCTTAACATGACCGTGTGGC AGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCGTACGCTTCCGGGCCTGGAATGGACAGATTTTTGA AGCTGGGGGTCAGTTCCGGCCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATGGCCGCTGGCATCAG ACACTCTTCACCTTCCGGACCCAAGACCCCCAACAGCTGCCCATCATCAGTGTGGACAACCTCCCTCCTG CCTCATCAGGGAAGCAGTACCGCCTGGAAGTTGGACCTGCGTGCTTCCTCTGA
Translation (1860 aa): MGAGSARGARGTAAAAAARGGGFLFSWILVSFACHLASTQGAPEDVDILQRLGLSWTKAGSPAPPGVIPF QSGFIFTQRARLQAPTGTVIPAALGTELALVLSLCSHRVNHAFLFAVRSQKRKLQLGLQFLPGKTVVHLG SRRSVAFDLDMHDGRWHHLALELRGRTVTLVTACGQRRVPVLLPFHRDPALDPGGSFLFGKMNPHAVQFE GALCQFSIYPVTQVAHNYCTHLRKQCGQADTYQSPLGPLFSQDSGRPFTFQSDLALLGLENLTTATPALG SLPAGRGPRGTVAPATPTKPQRTSPTNPHQHMAVGGPAQTPLLPAKLSASNALDPMLPASVGGSTRTPRP AAAQPSQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSR PAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSS PAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPG KAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPK GDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSG NPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGS DGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMK GLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEG FPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGE PGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPP GSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSG PPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGL EGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK GYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKG EQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKG AEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGP AGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMA GLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRG RPGPPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPL GTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMN FLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQ TLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL
|