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Report for CCDS42844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42844.1 Public Homo sapiens 20 ZCCHC3 24 110 108 CCDS HistoryNCBI Gene:85364Re-query CCDS DB by CCDS ID:42844.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42844.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000500893.4 ENSP00000484056.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000500893.4Link to Ensembl Protein Viewer:ENSP00000484056.1Re-query CCDS DB by Nucleotide ID:ENST00000500893Re-query CCDS DB by Protein ID:ENSP00000484056
Original member Current member NCBI NM_033089.7 NP_149080.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033089.7Link to Protein Sequence:NP_149080.2Re-query CCDS DB by Nucleotide ID:NM_033089Re-query CCDS DB by Protein ID:NP_149080Link to BLAST:NP_149080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149080.2 403 Q9NUD5-1 403 100% 0 0

Chromosomal Locations for CCDS 42844.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 297587 298798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCCACCGGCGGCGGCGCGGAGGAAGAGAGGAAACGGGGGCGGCCGCAGCTTCTGCCCCCCGCGCGGC
CCGCGGCCCGGGGCGAGGAGGCCGACGGCGGCCGCGAGAAGATGGGCTGGGCCCAGGTGGTGAAGAATCT
AGCCGAGAAGAAGGGCGAATTCCGCGAGCCGCGGCCGCCGCGGCGGGAGGAGGAAAGCGGCGGCGGTGGA
GGGAGCGCCGGGCTCGGCGGCCCCGCGGGCCTGGCGGCGCCGGACCTCGGCGACTTCCCACCGGCTGGCC
GCGGGGATCCGAAGGGCCGTCGGAGAGATCCGGCCGGCGAGGCGGTGGACCCCCGCAAAAAGAAGGGCGC
TGCGGAGGCGGGCAGGAGGAAGAAGGCCGAGGCGGCGGCGGCCGCCATGGCGACCCCGGCCAGGCCCGGC
GAGGCCGAGGACGCGGCCGAGCGGCCCCTCCAGGATGAGCCGGCGGCGGCGGCAGGCCCGGGCAAGGGTC
GCTTCCTCGTCCGCATCTGTTTCCAGGGAGACGAGGGCGCCTGCCCGACCCGGGACTTCGTGGTAGGAGC
GCTTATCCTGCGCTCCATCGGCATGGACCCGAGCGACATCTACGCGGTCATCCAGATCCCGGGCAGCCGC
GAATTCGACGTGAGCTTCCGCTCAGCGGAGAAGCTGGCCCTGTTCCTACGCGTCTACGAGGAGAAGCGGG
AGCAGGAGGACTGCTGGGAGAACTTTGTGGTGCTGGGGCGGAGCAAGTCCAGCTTGAAGACGCTCTTCAT
CCTCTTCCGGAACGAGACGGTGGACGTGGAGGACATTGTGACTTGGCTCAAGCGCCACTGCGACGTGCTG
GCCGTGCCGGTGAAAGTGACCGACAGGTTTGGGATCTGGACCGGGGAGTACAAATGCGAGATCGAGCTGC
GCCAGGGGGAGGGCGGGGTCAGGCACTTGCCAGGGGCCTTCTTCCTGGGGGCCGAGAGGGGCTACAGCTG
GTACAAGGGGCAGCCCAAGACATGCTTTAAATGTGGTTCCCGGACCCACATGAGCGGCAGCTGCACGCAG
GACAGGTGCTTCAGGTGCGGGGAGGAGGGGCACCTGAGCCCTTACTGCCGGAAGGGCATCGTGTGCAACC
TCTGTGGCAAGCGAGGACACGCCTTTGCCCAGTGTCCCAAAGCAGTGCACAATTCCGTGGCAGCTCAGCT
AACCGGCGTGGCCGGGCACTAA

Translation (403 aa):
MATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGG
GSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPG
EAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGACPTRDFVVGALILRSIGMDPSDIYAVIQIPGSR
EFDVSFRSAEKLALFLRVYEEKREQEDCWENFVVLGRSKSSLKTLFILFRNETVDVEDIVTWLKRHCDVL
AVPVKVTDRFGIWTGEYKCEIELRQGEGGVRHLPGAFFLGAERGYSWYKGQPKTCFKCGSRTHMSGSCTQ
DRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHNSVAAQLTGVAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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