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Report for CCDS48564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48564.1 Public Mus musculus 10 Duxf4 23 108 98 CCDS HistoryNCBI Gene:245263Re-query CCDS DB by CCDS ID:48564.1Re-query CCDS DB by GeneID:245263See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099726.4 ENSMUSP00000097314.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099726.4Link to Ensembl Protein Viewer:ENSMUSP00000097314.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099726Re-query CCDS DB by Protein ID:ENSMUSP00000097314
Original member Current member NCBI NM_001034869.2 NP_001030041.1 Accepted alive Link to Nucleotide Sequence:NM_001034869.2Link to Protein Sequence:NP_001030041.1Re-query CCDS DB by Nucleotide ID:NM_001034869Re-query CCDS DB by Protein ID:NP_001030041Link to BLAST:NP_001030041.1

Chromosomal Locations for CCDS 48564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 58235515 58236390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGCGCTCATCCAGCAGAAGGCCTCACACTGGACTCACTTTGTCACAGCGCAGGATCCTAGCACAAGCAT
TTGAGAGGAACCCACGACCAGGCTGTGCTACCAGGGAGGAGCTGGCACTTGAGACAGGGTTGCCCGAGGA
CATGATCCACACATGGTTGAAAAACAAAAGAGCTCGGCGCCACAGGAGGGGCAGGCCCACAGCTCAAGAT
CAAGACTTGCTGGCCTCACAAGTGTCCGGTGGGGCCCCTGCAGGTCCGGTAGGCAGGGGCCATGAAGTTG
CACAGGAGAGCTCATTGCCACAGGAAGAAGCAGGAAGTACGGGCATGGATACTACAAGCACCAGCTACTC
GCCCTCTTTCTGCAGAGAGTCCCAACTTTCCCAAGTGTCACAGCCCCGTGGAGCAGGCCAAAAAGAGGTC
CCCACTCAAGCAGGCAACGTAGGCCCTCTGGAACTTCTCCTTGATGAACTGCAGGACGAAGTACAGGTGA
AAGAGCATGTGCCAGACCCTTTGGATTTGGGTAGTGATCCTGGCGCCAGGGAGCCTGAAGGTTCCCAGGA
CAGCTTACAGAGCCTGGATGAAGCAGCAAATTCAGGCTGGCATACCTCGGTCCCGAGCATCTCGTCAACC
TTGTGCAGAGAGTCCCAGCCTTCCCAAGTGGCACAGCCCTCTGGACCAGGACAAGCACAGGCCCCCACTC
AAAGTGGGTTCATAGACCCTCTGGAGCTCTTTCTCGATGAACTGCTGACTGAAGTCCAACTTGAGGAGCA
GGGGCCTGCCCCTGTGAATGTGGAGGAAACAGGGGAGCAAATGGACACAACACCTGAGCTGCCTCTCACC
CCAGAAGAATATCAGACTCTTCTAGATATGCTCTGA

Translation (291 aa):
MRSSSRRPHTGLTLSQRRILAQAFERNPRPGCATREELALETGLPEDMIHTWLKNKRARRHRRGRPTAQD
QDLLASQVSGGAPAGPVGRGHEVAQESSLPQEEAGSTGMDTTSTSYSPSFCRESQLSQVSQPRGAGQKEV
PTQAGNVGPLELLLDELQDEVQVKEHVPDPLDLGSDPGAREPEGSQDSLQSLDEAANSGWHTSVPSISST
LCRESQPSQVAQPSGPGQAQAPTQSGFIDPLELFLDELLTEVQLEEQGPAPVNVEETGEQMDTTPELPLT
PEEYQTLLDML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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