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Report for CCDS3643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3643.1 Public Homo sapiens 4 UNC5C 24 110 108 CCDS HistoryNCBI Gene:8633Re-query CCDS DB by CCDS ID:3643.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3643.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453304.6 ENSP00000406022.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453304.6Link to Ensembl Protein Viewer:ENSP00000406022.1Re-query CCDS DB by Nucleotide ID:ENST00000453304Re-query CCDS DB by Protein ID:ENSP00000406022
Original member Current member NCBI NM_003728.4 NP_003719.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003728.4Link to Protein Sequence:NP_003719.3Re-query CCDS DB by Nucleotide ID:NM_003728Re-query CCDS DB by Protein ID:NP_003719Link to BLAST:NP_003719.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003719.3 931 O95185-1 931 100% 0 0

Chromosomal Locations for CCDS 3643.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 95169234 95169399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95170154 95170332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95182897 95183061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95185047 95185196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95202731 95202964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95206628 95206796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95216124 95216211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95218969 95219313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95219985 95220176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95242429 95242593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95244977 95245144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95250487 95250667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95278259 95278362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95301606 95301749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95335410 95335631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95548734 95548857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGAGGAAAGGTCTGCGGGCGACAGCGGCCCGCTGCGGACTGGGACTGGGATACTTGCTGCAAATGCTCG
TG
CTACCTGCCCTGGCCCTGCTCAGCGCCAGCGGCACTGGCTCCGCCGCCCAAGATGATGACTTTTTTCA
T
GAACTCCCAGAAACTTTTCCTTCTGATCCACCTGAGCCTCTGCCACATTTCCTTATTGAGCCTGAAGAA
GCT
TATATTGTGAAGAATAAGCCCGTGAACCTGTACTGTAAAGCAAGCCCTGCCACCCAGATCTATTTCA
AG
TGTAATAGTGAATGGGTTCATCAGAAGGACCACATAGTAGATGAAAGAGTAGATGAAACTTCCGGTCT
C
ATTGTCCGGGAAGTGAGCATTGAGATTTCGCGCCAGCAAGTGGAAGAACTCTTTGGACCTGAAGATTAC
TGG
TGCCAGTGTGTGGCCTGGAGCTCCGCGGGTACCACAAAGAGCCGGAAGGCGTATGTGCGCATTGCAT
AT
CTACGGAAGACATTTGAGCAGGAACCCCTAGGAAAGGAAGTGTCTTTGGAACAGGAAGTCTTACTCCA
G
TGTCGACCACCTGAAGGGATCCCAGTGGCTGAGGTGGAATGGTTGAAAAATGAAGACATAATTGATCCC
GTT
GAAGATCGGAATTTTTATATTACTATTGATCACAACCTCATCATAAAGCAGGCCCGACTCTCTGATA
CT
GCAAATTACACCTGTGTTGCCAAAAACATTGTTGCCAAGAGGAAAAGTACAACTGCCACTGTCATAGT
C
TATGTCAACGGTGGCTGGTCCACCTGGACGGAGTGGTCTGTGTGTAACAGCCGCTGTGGACGAGGGTAT
CAG
AAACGTACAAGGACTTGTACCAACCCGGCACCACTCAATGGGGGTGCCTTCTGTGAAGGGCAGAGTG
TG
CAGAAAATAGCCTGTACTACGTTATGCCCAGTGGATGGCAGGTGGACGCCATGGAGCAAGTGGTCTAC
T
TGTGGAACTGAGTGCACCCACTGGCGCAGGAGGGAGTGCACGGCGCCAGCCCCCAAGAATGGAGGCAAG
GAC
TGCGACGGCCTCGTCTTGCAATCCAAGAACTGCACTGATGGGCTTTGCATGCAGACTGCTCCTGATT
CA
GATGATGTTGCTCTCTATGTTGGGATTGTGATAGCAGTGATCGTTTGCCTGGCGATCTCTGTAGTTGT
G
GCCTTGTTTGTGTATCGGAAGAATCATCGTGACTTTGAGTCAGATATTATTGACTCTTCGGCACTCAAT
GGG
GGCTTTCAGCCTGTGAACATCAAGGCAGCAAGACAAGATCTGCTGGCTGTACCCCCAGACCTCACGT
CA
GCTGCAGCCATGTACAGAGGACCTGTCTATGCCCTGCATGACGTCTCAGACAAAATCCCAATGACCAA
C
TCTCCAATTCTGGATCCACTGCCCAACCTGAAAATCAAAGTGTACAACACCTCAGGTGCTGTCACCCCC
CAA
GATGACCTCTCTGAGTTTACGTCCAAGCTGTCCCCTCAGATGACCCAGTCGTTGTTGGAGAATGAAG
CC
CTCAGCCTGAAGAACCAGAGTCTAGCAAGGCAGACTGATCCATCCTGTACCGCATTTGGCAGCTTCAA
C
TCGCTGGGAGGTCACCTTATTGTTCCCAATTCAGGAGTCAGCTTGCTGATTCCCGCTGGGGCCATTCCC
CAA
GGGAGAGTCTACGAAATGTATGTGACTGTACACAGGAAAGAAACTATGAGGCCACCCATGGATGACT
CT
CAGACACTTTTGACCCCTGTGGTGAGCTGTGGGCCCCCAGGAGCTCTGCTCACCCGCCCAGTCGTCCT
C
ACTATGCATCACTGCGCAGACCCCAATACCGAGGACTGGAAAATACTGCTCAAGAACCAGGCAGCACAG
GGA
CAGTGGGAGGATGTGGTGGTGGTCGGGGAGGAAAACTTCACCACCCCCTGCTACATTCAGCTGGATG
CA
GAGGCCTGCCACATCCTCACAGAGAACCTCAGCACCTACGCCCTGGTAGGACATTCCACCACCAAAGC
G
GCTGCGAAGCGCCTCAAGCTGGCCATCTTTGGGCCCCTGTGCTGCTCCTCGCTGGAGTACAGCATCCGA
GTC
TACTGTCTGGATGACACCCAGGATGCCCTGAAGGAAATTTTACATCTTGAGAGACAGATGGGAGGAC
AG
CTCCTAGAAGAACCTAAGGCTCTTCATTTTAAAGGCAGCACCCACAACCTGCGCCTGTCAATTCACGA
T
ATCGCCCATTCCCTCTGGAAGAGCAAATTGCTGGCTAAATATCAGGAAATTCCATTTTACCATGTTTGG
AGT
GGATCTCAAAGAAACCTGCACTGCACCTTCACTCTGGAAAGATTTAGCCTGAACACAGTGGAGCTGG
TT
TGCAAACTCTGTGTGCGGCAGGTGGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGCACCGTGTCAGA
G
GAACCTACTGGCATCGATTTGCCGCTGCTGGATCCTGCGAACACCATCACCACGGTCACGGGGCCCAGT
GCT
TTCAGCATCCCTCTCCCTATCCGGCAGAAGCTCTGTAGCAGCCTGGATGCCCCCCAGACGAGAGGCC
AT
GACTGGAGGATGCTGGCCCATAAGCTGAACCTGGACAGGTACTTGAATTACTTTGCCACCAAATCCAG
C
CCAACTGGCGTAATCCTGGATCTTTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCATGCTGGCA
GCT
GTCTTGGAAGAAATGGGAAGACATGAAACGGTGGTGTCCTTAGCAGCAGAAGGGCAGTATTAA


Translation (931 aa):
MRKGLRATAARCGLGLGYLLQMLVLPALALLSASGTGSAAQDDDFFHELPETFPSDPPEPLPHFLIEPEE
A
YIVKNKPVNLYCKASPATQIYFKCNSEWVHQKDHIVDERVDETS
GLIVREVSIEISRQQVEELFGPEDY
W
CQCVAWSSAGTTKSRKAYVRIA
YLRKTFEQEPLGKEVSLEQEVLLQCRPPEGIPVAEVEWLKNEDIIDP
V
EDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVAKRKSTTATVIVY
VNGGWSTWTEWSVCNSRCGRGY
Q
KRTRTCTNPAPLNGGAFCEGQSVQKIACTTLCP
VDGRWTPWSKWSTCGTECTHWRRRECTAPAPKNGGK
D
CDGLVLQSKNCTDGLCMQ
TAPDSDDVALYVGIVIAVIVCLAISVVVALFVYRKNHRDFESDIIDSSALN
G
GFQPVNIKAARQ
DLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNTSGAVTP
Q
DDLSEFTSKLSPQMTQSLLENEALSLKNQSLARQTDPSCTAFGSFNSLGGHLIVPNS
GVSLLIPAGAIP
Q
GRVYEMYVTVHRKETM
RPPMDDSQTLLTPVVSCGPPGALLTRPVVLTMHHCADPNTEDWKILLKNQAAQ
G
QWE
DVVVVGEENFTTPCYIQLDAEACHILTENLSTYALVGHSTTKAAAKRLKLAIFGPLCCSSLEYSIR
V
YCLDDTQDALK
EILHLERQMGGQLLEEPKALHFKGSTHNLRLSIHDIAHSLWKSKLLAKYQEIPFYHVW
S
GSQRNLHCTFTLERFSLNTVELVCKLCVRQVEGEGQIFQLNCTVSE
EPTGIDLPLLDPANTITTVTGPS
A
FSIPLPIRQKLCSSLDAPQTRGHDWRMLAHKLNLD
RYLNYFATKSSPTGVILDLWEAQNFPDGNLSMLA
A
VLEEMGRHETVVSLAAEGQY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser