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Report for CCDS8308.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
8308.1 |
Public |
Homo sapiens |
11 |
JRKL |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:8690](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:8308.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 8308.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000332349.5 |
ENSP00000333350.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000332349.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000333350.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000332349](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000333350](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001261833.2 |
NP_001248762.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001261833.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001248762.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001261833](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001248762](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001248762.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_003772.4 |
NP_003763.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_003772.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_003763.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_003772](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_003763](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_003763.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 8308.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1575 nt): ATGTCAGGGAAACGGAAGCGTGTGGTGTTGACTATTAAAGATAAGCTTGATATAATAAAGAAACTTGAAG ACGGAGGTTCTTCCAAACAACTGGCAGTGATTTATGGAATTGGTGAAACAACAGTTCGGGATATAAGAAA AAATAAGGAAAAGATTATAACTTATGCAAGCAGTTCTGATTCCACAAGTCTTTTGGCCAAGAGGAAATCT ATGAAGCCATCCATGTATGAGGAATTGGACAGGGCAATGCTGGAATGGTTCAACCAGCAAAGAGCAAAAG GGAATCCCATATCTGGACCAATTTGTGCAAAAAGGGCAGAGTTCTTCTTTTATGCTTTGGGAATGGATGG TGATTTTAACCCCTCTGCCGGTTGGCTAACTCGTTTTAAGCAGCGGCACAGCATTAGAGAGATTAACATT AGAAATGAAAGATTAAATGGAGATGAGACTGCGGTGGAAGATTTTTGTAATAACTTTCGAGATTTTATTG AACGAGAGAATTTACAGCCTGAACAAATCTACAATGCAGATGAAACTGGACTCTTTTGGAAGTGCTTGCC TTCTAGGATTTCAGTAATCAAAGGTAAATGCACTGTCCCTGGGCACAAATCAATTGAAGAAAGAGTCACA ATCATGTGTTGTGCCAATGCAACAGGTTTACACAAACTTAAACTTTGTGTTGTGGGGAAAGCAAAGAAAC CTCGCTCCTTTAAATCAACTGACACCTTAAACCTGCCAGTCTCTTATTTCAGCCAAAAAGGTGCATGGAT GGATCTTTCCATTTTCCGACAATGGTTTGATAAAATTTTTGTGCCGCAAGTTCGAGAGTATTTAAGATCT AAAGGCTTGCAGGAAAAGGCTGTGCTCTTGTTGGATAATTCACCAACACATCCAAATGAAAATGTCCTAA GGTCAGATGATGGCCAAATATTTGCTAAATATTTACCACCTAATGTGGCCTCATTGATTCAGCCTTCAGA TCAGGGAGTCATAGCAACGATGAAGAGAAATTATCGTGCAGGTCTTCTCCAGAACAACTTGGAAGAAGGT AATGACCTGAAATCATTCTGGAAGAAGCTAACTCTGTTGGATGCACTTTATGAAATAGCAATGGCATGGA ACTTAGTAAAACCAGTTACCATTAGCAGAGCATGGAAGAAGATTCTCCCTATGGTAGAGGAGAAAGAGAG CCTGGACTTTGATGTTGAAGATATTTCTGTGGCTACTGTGGCTGCCATTTTACAACACACCAAAGGATTG GAAAATGTGACTACTGAGAACCTTGAAAAATGGCTTGAAGTAGACAGTACTGAACCAGGCTATGAAGTGT TAACTGATAGCGAAATCATCAGAAGAGCACAAGGCCAGGCAGATGAATCCAGTGAAAATGAGGAGGAGGA AATAGAACTAATTCCAGAGAAACATATTAATCATGCAGCTGCCCTCCAGTGGACTGAAAATTTATTGGAT TATCTAGAACAACAAGGTGATATGATTCTACCTGATAGACTGGTAATACGTAAACTTCGAGCCACCATCA GAAATAAACAGAAGATGACAAAGTCAAGTCAATAA
Translation (524 aa): MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKS MKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDFNPSAGWLTRFKQRHSIREINI RNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVT IMCCANATGLHKLKLCVVGKAKKPRSFKSTDTLNLPVSYFSQKGAWMDLSIFRQWFDKIFVPQVREYLRS KGLQEKAVLLLDNSPTHPNENVLRSDDGQIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGLLQNNLEEG NDLKSFWKKLTLLDALYEIAMAWNLVKPVTISRAWKKILPMVEEKESLDFDVEDISVATVAAILQHTKGL ENVTTENLEKWLEVDSTEPGYEVLTDSEIIRRAQGQADESSENEEEEIELIPEKHINHAAALQWTENLLD YLEQQGDMILPDRLVIRKLRATIRNKQKMTKSSQ
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