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Report for CCDS80237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80237.1 Public Mus musculus 5 Cnpy1 23 108 98 CCDS HistoryNCBI Gene:269637Re-query CCDS DB by CCDS ID:80237.1Re-query CCDS DB by GeneID:269637See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118882.1 ENSMUSP00000113944.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118882.1Link to Ensembl Protein Viewer:ENSMUSP00000113944.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118882Re-query CCDS DB by Protein ID:ENSMUSP00000113944
Original member Current member NCBI NM_001310511.1 NP_001297440.1 Accepted alive Link to Nucleotide Sequence:NM_001310511.1Link to Protein Sequence:NP_001297440.1Re-query CCDS DB by Nucleotide ID:NM_001310511Re-query CCDS DB by Protein ID:NP_001297440Link to BLAST:NP_001297440.1
Original member Current member NCBI NM_001310512.1 NP_001297441.1 Accepted alive Link to Nucleotide Sequence:NM_001310512.1Link to Protein Sequence:NP_001297441.1Re-query CCDS DB by Nucleotide ID:NM_001310512Re-query CCDS DB by Protein ID:NP_001297441Link to BLAST:NP_001297441.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297440.1 94 Q4VAB4-1 94 100% 0 0
NP_001297441.1 94 Q4VAB4-1 94 100% 0 0

Chromosomal Locations for CCDS 80237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 28203399 28203436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 28207287 28207383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 28209124 28209273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGCGAATGAACGATTACCAGCTGGAGGACGACCCAGTGACCAAGCAGAAGTATTTCAGGAGATATGCTC
CGAGGAAGGGAGACAAAATATACAAAGAATATAAAAAGTTCTTCTTTTATTCTGATGCCTTCAGACCTTT
GAAATTCGCGTGCGAAGCCATCATTGAAAAGTATGAAGATGAGATATTCGAACTTATTGCCCAGGAGGCA
AACCATCTAGCTGATATGCTGTGCAATGAAAAATCAGATCTATGTGGCACTCCTACCAACAGCCCTGAAC
CCTAG

Translation (94 aa):
MRMNDYQLEDDPVTKQKYFRRYAPRKGDKIYKEYKKFFFYSDAFRPLKFACEAIIEKYEDEIFELIAQEA
NHLADMLCNEKSDLCGTPTNSPEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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