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Report for CCDS13965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13965.1 Public Homo sapiens 22 PICK1 24 110 108 CCDS HistoryNCBI Gene:9463Re-query CCDS DB by CCDS ID:13965.1Re-query CCDS DB by GeneID:9463See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13965.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356976.8 ENSP00000349465.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356976.8Link to Ensembl Protein Viewer:ENSP00000349465.3Re-query CCDS DB by Nucleotide ID:ENST00000356976Re-query CCDS DB by Protein ID:ENSP00000349465
Original member Current member EBI ENST00000404072.7 ENSP00000385205.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404072.7Link to Ensembl Protein Viewer:ENSP00000385205.3Re-query CCDS DB by Nucleotide ID:ENST00000404072Re-query CCDS DB by Protein ID:ENSP00000385205
Original member Current member NCBI NM_001039583.1 NP_001034672.1 Accepted alive Link to Nucleotide Sequence:NM_001039583.1Link to Protein Sequence:NP_001034672.1Re-query CCDS DB by Nucleotide ID:NM_001039583Re-query CCDS DB by Protein ID:NP_001034672Link to BLAST:NP_001034672.1
Original member Current member NCBI NM_001039584.1 NP_001034673.1 Accepted alive Link to Nucleotide Sequence:NM_001039584.1Link to Protein Sequence:NP_001034673.1Re-query CCDS DB by Nucleotide ID:NM_001039584Re-query CCDS DB by Protein ID:NP_001034673Link to BLAST:NP_001034673.1
Original member Current member NCBI NM_012407.4 NP_036539.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012407.4Link to Protein Sequence:NP_036539.1Re-query CCDS DB by Nucleotide ID:NM_012407Re-query CCDS DB by Protein ID:NP_036539Link to BLAST:NP_036539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034672.1 415 Q9NRD5-1 415 100% 0 0
NP_001034673.1 415 Q9NRD5-1 415 100% 0 0
NP_036539.1 415 Q9NRD5-1 415 100% 0 0

Chromosomal Locations for CCDS 13965.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38057810 38057850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38059234 38059345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38065002 38065130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38067704 38067770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38069033 38069122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38070838 38070891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38071682 38071744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38072477 38072610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38073000 38073092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38073773 38073823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38074307 38074451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38074864 38075132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGTTTGCAGACTTGGATTATGACATCGAAGAGGATAAACTCGGAATCCCGACTGTGCCTGGGAAGGTGA
CCCTGCAGAAGGATGCTCAGAACCTGATCGGGATCAGCATTGGAGGAGGGGCCCAGTACTGTCCCTGCCT
CTATATCGTCCAGGTATTTGACAACACCCCAGCAGCCTTGGACGGCACAGTGGCAGCTGGCGATGAGATC
ACCGGTGTCAATGGCAGGTCAATCAAAGGGAAAACTAAGGTGGAGGTGGCGAAGATGATTCAGGAGGTGA
AGGGGGAGGTGACCATCCACTACAACAAGCTGCAGGCGGACCCCAAGCAGGGCATGTCCCTGGACATTGT
GTTGAAGAAAGTCAAGCACCGGCTGGTGGAGAACATGAGTTCAGGGACCGCAGATGCTCTGGGCCTGAGC
CGGGCCATCCTGTGCAATGATGGGCTTGTCAAGAGGCTAGAGGAGCTGGAGCGGACCGCTGAGCTATACA
AAGGGATGACGGAACACACCAAGAACCTCCTACGGGCCTTTTATGAGCTGTCGCAGACTCACCGGGCCTT
TGGGGACGTGTTCTCCGTGATCGGGGTGCGGGAGCCCCAGCCAGCTGCGAGCGAGGCTTTTGTGAAGTTC
GCCGATGCCCACCGCAGCATCGAGAAGTTCGGCATTCGGCTTCTGAAAACCATCAAGCCGATGCTGACGG
ATCTGAACACGTACCTCAACAAAGCCATCCCGGACACTCGCCTCACCATCAAGAAGTACCTGGACGTGAA
GTTTGAGTACCTGTCGTACTGCCTGAAGGTGAAGGAGATGGATGACGAGGAATACAGCTGCATTGCCCTA
GGCGAGCCCCTTTACCGGGTGAGCACCGGCAACTATGAGTACCGCCTGATCCTGCGCTGCCGCCAGGAGG
CGCGCGCCCGCTTCTCCCAGATGCGCAAGGATGTGCTGGAGAAGATGGAGCTGCTGGACCAGAAGCACGT
CCAGGACATCGTGTTCCAGCTGCAGCGCCTCGTGTCCACCATGTCCAAGTACTACAACGACTGCTACGCA
GTGCTGCGGGATGCCGACGTCTTCCCCATCGAGGTAGACCTGGCGCACACCACATTGGCCTATGGCCTCA
ACCAGGAGGAGTTCACAGATGGGGAGGAGGAGGAGGAGGAGGAAGACACGGCAGCTGGGGAGCCGTCCAG
GGATACACGAGGGGCTGCTGGGCCCTTGGACAAGGGTGGAAGCTGGTGTGACTCCTGA

Translation (415 aa):
MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEI
TGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKKVKHRLVENMSSGTADALGLS
RAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHRAFGDVFSVIGVREPQPAASEAFVKF
ADAHRSIEKFGIRLLKTIKPMLTDLNTYLNKAIPDTRLTIKKYLDVKFEYLSYCLKVKEMDDEEYSCIAL
GEPLYRVSTGNYEYRLILRCRQEARARFSQMRKDVLEKMELLDQKHVQDIVFQLQRLVSTMSKYYNDCYA
VLRDADVFPIEVDLAHTTLAYGLNQEEFTDGEEEEEEEDTAAGEPSRDTRGAAGPLDKGGSWCDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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