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Report for CCDS79114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79114.1 Public Mus musculus 12 Psma6 23 108 98 CCDS HistoryNCBI Gene:26443Re-query CCDS DB by CCDS ID:79114.1Re-query CCDS DB by GeneID:26443See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163070.7 ENSMUSP00000124781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163070.7Link to Ensembl Protein Viewer:ENSMUSP00000124781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163070Re-query CCDS DB by Protein ID:ENSMUSP00000124781
Original member Current member NCBI NM_001310583.1 NP_001297512.1 Accepted alive Link to Nucleotide Sequence:NM_001310583.1Link to Protein Sequence:NP_001297512.1Re-query CCDS DB by Nucleotide ID:NM_001310583Re-query CCDS DB by Protein ID:NP_001297512Link to BLAST:NP_001297512.1

Chromosomal Locations for CCDS 79114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55384309 55384327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55407469 55407563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55408002 55408083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55410127 55410282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55412187 55412365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55414404 55414498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55418237 55418294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCCAGTCTCCGAAAAAAATATGCTTTTAAGGCTATTAACCAGGGTGGACTTACATCTGTTGCTGTCA
GAGGAAAGGACTGTGCAGTTATTGTCACACAGAAGAAAGTACCCGACAAACTACTGGATTCCAGCACAGT
GACTCACTTGTTCAAGATAACGGAAAGCATTGGCTGTGTGATGACAGGAATGACAGCTGACAGCAGATCC
CAGGTACAGAGGGCACGCTATGAGGCAGCTAATTGGAAATACAAGTATGGCTATGAAATTCCTGTGGACA
TGCTGTGCAAAAGAATTGCTGATATTTCTCAAGTCTACACACAGAACGCTGAAATGAGGCCACTCGGTTG
TTGTATGATTTTAATCGGTATCGATGAAGAGCAAGGCCCTCAAGTGTACAAGTGTGATCCTGCAGGTTAC
TACTGTGGCTTTAAAGCCACGGCGGCAGGAGTTAAACAAACAGAGTCAACCAGCTTCCTTGAAAAGAAAG
TGAAGAAGAAATTTGATTGGACATTTGAACAGACAGTGGAAACTGCAATTACATGCCTGTCTACTGTTCT
GTCGATTGACTTCAAACCTTCAGAAATAGAAGTTGGAGTAGTTACAGTTGAAAATCCTAAATTCAGGATT
CTTACTGAAGCAGAGATTGACGCTCACCTTGTTGCTCTAGCAGAGAGAGACTGA

Translation (227 aa):
MASLRKKYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRS
QVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGY
YCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRI
LTEAEIDAHLVALAERD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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