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Report for CCDS80271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80271.1 Public Mus musculus 5 Rab28 23 108 98 CCDS HistoryNCBI Gene:100972Re-query CCDS DB by CCDS ID:80271.1Re-query CCDS DB by GeneID:100972See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202913.1 ENSMUSP00000144440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202913.1Link to Ensembl Protein Viewer:ENSMUSP00000144440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202913Re-query CCDS DB by Protein ID:ENSMUSP00000144440
Original member Current member NCBI NM_001310590.1 NP_001297519.1 Accepted alive Link to Nucleotide Sequence:NM_001310590.1Link to Protein Sequence:NP_001297519.1Re-query CCDS DB by Nucleotide ID:NM_001310590Re-query CCDS DB by Protein ID:NP_001297519Link to BLAST:NP_001297519.1

Chromosomal Locations for CCDS 80271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 41625080 41625088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41633173 41633250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41635806 41635909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41687721 41687850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41698390 41698478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41703438 41703534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41707905 41707979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGTCAGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCACCTCGG
GGAAGACCTCCTTAGCTACGTGTTTTGCTCAAGAGACATTTGGGAAGCAGTACAAGCAGACGATAGGACT
GGATTTCTTTTTGAGAAGGATTACCTTACCAGGAAATTTGAATGTTACTCTTCAAGTTTGGGATATAGGA
GGGCAGACAATAGGTGGCAAGATGTTGGATAAATACATCTATGGAGCACAGGGAATCCTCTTGGTATATG
ATATTACAAACTACCAAAGCTTTGAGAATTTGGAAGATTGGTATTCTGTGGTGAAGACAGTAAGTGAAGA
GTCAGAAACTCAGCCCCTGGTTGCTTTAGTGGGCAATAAAATTGACTTGGAGCATATGCGAACAGTAAAA
GCTGATAAGCACTTACGATTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTTTCAGCCAAGACAGGAG
ACTCTGTCTTCCTGTGTTTTCAGAAAGTTGCAGCAGAAATCCTGGGAATCAAATTAAACAAAGCAGAAAT
AGAACAGTCACAGACTGTATGA

Translation (193 aa):
MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIG
GQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVK
ADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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