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Report for CCDS6974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6974.1 Public Homo sapiens 9 CACFD1 24 110 108 CCDS HistoryNCBI Gene:11094Re-query CCDS DB by CCDS ID:6974.1Re-query CCDS DB by GeneID:11094See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6974.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316948.9 ENSP00000317121.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316948.9Link to Ensembl Protein Viewer:ENSP00000317121.4Re-query CCDS DB by Nucleotide ID:ENST00000316948Re-query CCDS DB by Protein ID:ENSP00000317121
Original member Current member NCBI NM_017586.5 NP_060056.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017586.5Link to Protein Sequence:NP_060056.1Re-query CCDS DB by Nucleotide ID:NM_017586Re-query CCDS DB by Protein ID:NP_060056Link to BLAST:NP_060056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060056.1 172 Q9UGQ2-1 172 100% 0 0

Chromosomal Locations for CCDS 6974.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133460067 133460187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133463483 133463555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133465322 133465447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133467921 133468028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133468563 133468653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGAGCAGCTCAGGTGGGGCGCCCGGGGCGTCCGCCAGCTCTGCGCCGCCCGCGCAGGAAGAGGGCATGA
CGTGGTGGTACCGCTGGCTGTGTCGCCTGTCTGGGGTGCTGGGGGCAGTCTCTTGCGCGATCTCTGGCCT
CTTCAACTGCATCACCATCCACCCTCTGAACATTGCGGCCGGCGTGTGGATGATCATGAATGCCTTCATC
TTGTTGCTGTGTGAGGCGCCCTTCTGCTGCCAGTTCATCGAGTTTGCAAACACAGTGGCGGAGAAGGTGG
ACCGGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGGGATGGCGGTCGTTCCCATCGTCATCAGCCT
GACCCTGACCACGCTGCTGGGCAACGCCATCGCCTTTGCTACGGGGGTGCTGTACGGACTCTCTGCTCTG
GGCAAAAAGGGCGATGCGATCTCCTATGCCAGGATCCAGCAGCAGAGGCAGCAGGCGGATGAGGAGAAGC
TCGCGGAGACCCTGGAGGGGGAGCTGTGA

Translation (172 aa):
MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFI
LLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFATGVLYGLSAL
GKKGDAISYARIQQQRQQADEEKLAETLEGEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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