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Report for CCDS47825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47825.1 Public Homo sapiens 8 BIN3 24 110 108 CCDS HistoryNCBI Gene:55909Re-query CCDS DB by CCDS ID:47825.1Re-query CCDS DB by GeneID:55909See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47825.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276416.11 ENSP00000276416.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276416.11Link to Ensembl Protein Viewer:ENSP00000276416.6Re-query CCDS DB by Nucleotide ID:ENST00000276416Re-query CCDS DB by Protein ID:ENSP00000276416
Original member Current member NCBI NM_018688.6 NP_061158.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018688.6Link to Protein Sequence:NP_061158.1Re-query CCDS DB by Nucleotide ID:NM_018688Re-query CCDS DB by Protein ID:NP_061158Link to BLAST:NP_061158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061158.1 253 Q9NQY0-1 253 100% 0 0

Chromosomal Locations for CCDS 47825.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22621422 22621568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22623915 22624049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22624222 22624363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22629964 22630004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22630442 22630578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22636525 22636586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22636922 22636962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22644755 22644803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22669044 22669051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAGCTGGATTCCTTTTAAGATTGGGCAGCCCAAGAAACAGATTGTGCCCAAAACAGTGGAGAGAGACT
TTGAAAGGGAGTATGGAAAACTTCAGCAGCTGGAAGAGCAGACCCGGAGGCTGCAGAAAGACATGAAGAA
GAGCACCGACGCAGACCTGGCCATGTCAAAATCTGCCGTGAAGATATCCTTGGACTTACTCTCCAATCCC
CTCTGTGAGCAAGACCAGGACCTTCTGAACATGGTGACGGCCCTGGACACGGCCATGAAGCGGATGGATG
CCTTCAATCAGGAAAAGGTGAACCAGATCCAGAAGACTGTGATCGAGCCCTTAAAAAAGTTCGGCAGTGT
CTTCCCGAGCCTCAACATGGCTGTGAAGAGGCGGGAACAGGCCTTGCAGGACTACAGGAGGCTGCAGGCC
AAGGTGGAGAAGTATGAGGAAAAGGAGAAGACGGGGCCAGTGCTGGCCAAGCTCCACCAGGCACGAGAGG
AGCTGCGGCCTGTGCGGGAGGACTTTGAAGCCAAGAACAGGCAGCTGCTGGAGGAGATGCCGCGCTTCTA
CGGCAGCCGCCTCGACTACTTCCAGCCCAGCTTTGAGTCCCTCATCCGAGCTCAGGTTGTGTACTACTCG
GAAATGCACAAGATCTTTGGAGACCTGTCCCATCAGCTTGACCAGCCAGGCCACTCCGATGAGCAGCGGG
AGCGGGAGAACGAGGCCAAACTCAGTGAGCTCCGGGCCCTCTCCATTGTGGCCGATGACTGA

Translation (253 aa):
MSWIPFKIGQPKKQIVPKTVERDFEREYGKLQQLEEQTRRLQKDMKKSTDADLAMSKSAVKISLDLLSNP
LCEQDQDLLNMVTALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLNMAVKRREQALQDYRRLQA
KVEKYEEKEKTGPVLAKLHQAREELRPVREDFEAKNRQLLEEMPRFYGSRLDYFQPSFESLIRAQVVYYS
EMHKIFGDLSHQLDQPGHSDEQRERENEAKLSELRALSIVADD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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