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Report for CCDS3578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3578.1 Public Homo sapiens 4 STBD1 24 110 108 CCDS HistoryNCBI Gene:8987Re-query CCDS DB by CCDS ID:3578.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237642.7 ENSP00000237642.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237642.7Link to Ensembl Protein Viewer:ENSP00000237642.6Re-query CCDS DB by Nucleotide ID:ENST00000237642Re-query CCDS DB by Protein ID:ENSP00000237642
Original member Current member NCBI NM_003943.5 NP_003934.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003943.5Link to Protein Sequence:NP_003934.1Re-query CCDS DB by Nucleotide ID:NM_003943Re-query CCDS DB by Protein ID:NP_003934Link to BLAST:NP_003934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003934.1 358 O95210 358 100% 0 0

Chromosomal Locations for CCDS 3578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76306770 76306989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76309144 76310000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGGCGCCGTCTGGTCCGCCCTGCTGGTTGGAGGGGGTCTGGCCGGAGCACTTTTCGTTTGGCTGCTGC
GG
GGCGGCCCTGGCGACACCGGGAAGGACGGGGATGCGGAGCAGGAGAAAGACGCCCCTCTTGGGGGAGC
T
GCGATTCCGGGAGGCCATCAGAGTGGCAGCAGCGGACTGAGCCCTGGACCTTCCGGGCAGGAGCTGGTC
ACC
AAACCAGAGCATCTTCAAGAAAGCAATGGACATTTGATTTCTAAGACCAAAGACCTTGGTAAACTGC
AA
GCAGCATCATGGAGATTGCAGAATCCTTCCAGGGAAGTCTGTGACAATTCAAGAGAACATGTTCCTTC
T
GGACAGTTTCCAGACACAGAAGCTCCAGCTACCTCTGAGACCAGTAACTCTAGGAGTTACTCTGAAGTT
TCA
AGAAATGAAAGCCTTGAATCTCCTATGGGAGAATGGGGATTCCAAAAAGGACAAGAGATATCTGCTA
AA
GCAGCTACATGTTTTGCAGAGAAGTTGCCTTCTAGCAACCTGCTCAAGAACAGAGCTAAAGAAGAAAT
G
AGCCTCTCTGATTTGAACAGTCAGGACCGGGTTGACCACGAGGAGTGGGAAATGGTGCCTAGGCACTCA
TCT
TGGGGGGATGTTGGTGTGGGTGGCAGTCTTAAGGCTCCAGTGTTAAACCTAAACCAGGGAATGGACA
AT
GGAAGAAGCACTTTGGTGGAAGCAAGAGGTCAGCAAGTGCATGGGAAAATGGAAAGGGTAGCAGTGAT
G
CCTGCAGGGTCTCAGCAAGTTAGTGTCAGGTTCCAGGTCCATTATGTCACAAGCACTGATGTGCAATTC
ATT
GCAGTAACTGGAGACCATGAGTGTCTTGGGAGATGGAACACTTACATCCCACTCCACTATAACAAGG
AT
GGGTTCTGGTCTCATTCCATTTTCCTGCCTGCAGATACAGTGGTGGAGTGGAAGTTTGTGTTGGTAGA
G
AATGGGGGAGTTACCCGCTGGGAAGAATGCAGCAATAGATTCCTAGAAACTGGCCATGAGGATAAAGTG
GTT
CACGCATGGTGGGGGATTCACTGA


Translation (358 aa):
MGAVWSALLVGGGLAGALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELV
T
KP
EHLQESNGHLISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQFPDTEAPATSETSNSRSYSEV
S
RNESLESPMGEWGFQKGQEISAKAATCFAEKLPSSNLLKNRAKEEMSLSDLNSQDRVDHEEWEMVPRHS
S
WGDVGVGGSLKAPVLNLNQGMDNGRSTLVEARGQQVHGKMERVAVMPAGSQQVSVRFQVHYVTSTDVQF
I
AVTGDHECLGRWNTYIPLHYNKDGFWSHSIFLPADTVVEWKFVLVENGGVTRWEECSNRFLETGHEDKV
V
HAWWGIH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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