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Report for CCDS7018.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7018.2 Public Homo sapiens 9 LCN12 24 110 108 CCDS HistoryNCBI Gene:286256Re-query CCDS DB by CCDS ID:7018.2Re-query CCDS DB by GeneID:286256See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7018.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371633.8 ENSP00000360696.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371633.8Link to Ensembl Protein Viewer:ENSP00000360696.3Re-query CCDS DB by Nucleotide ID:ENST00000371633Re-query CCDS DB by Protein ID:ENSP00000360696
Original member Current member NCBI NM_178536.4 NP_848631.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178536.4Link to Protein Sequence:NP_848631.2Re-query CCDS DB by Nucleotide ID:NM_178536Re-query CCDS DB by Protein ID:NP_848631Link to BLAST:NP_848631.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848631.2 192 Q6JVE5 192 100% 0 0

Chromosomal Locations for CCDS 7018.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136952328 136952441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136952892 136953028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136953700 136953779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136953848 136953964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136954154 136954255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136955371 136955399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGAGGCTGCTGTGTGGCCTGTGGCTGTGGCTCTCCTTGCTGAAAGTCCTGCAGGCCCAGACCCCAACCC
CCCTGCCACTCCCGCCCCCGATGCAGAGCTTCCAAGGAAACCAGTTCCAGGGGGAATGGTTCGTCCTGGG
CCTGGCGGGCAACAGCTTCAGGCCGGAGCACAGGGCGCTGCTGAACGCTTTCACCGCAACTTTTGAGCTA
AGTGATGATGGCCGCTTTGAGGTGTGGAATGCGATGACTCGAGGCCAGCACTGTGACACATGGTCTTATG
TGCTGATACCGGCAGCCCAGCCTGGGCAGTTCACTGTGGACCACGGTGTGGAGCCCGGGGCGGACAGAGA
GGAGACCCGGGTGGTGGACAGCGACTACACCCAGTTCGCCCTGATGCTGTCCCGCAGACACACGAGCAGG
CTGGCCGTCCTCAGGATCAGCCTGCTGGGCAGGAGCTGGTTGCTGCCTCCCGGGACGCTGGACCAGTTCA
TCTGCCTGGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCAGATGTGACTGGCTGGTCACC
CCAGGCCAGCGTCTGTTGA

Translation (192 aa):
MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFTATFEL
SDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDHGVEPGADREETRVVDSDYTQFALMLSRRHTSR
LAVLRISLLGRSWLLPPGTLDQFICLGRAQGLSDDNIVFPDVTGWSPQASVC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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