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Report for CCDS33143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33143.1 Public Homo sapiens 2 TAF1B 24 110 108 CCDS HistoryNCBI Gene:9014Re-query CCDS DB by CCDS ID:33143.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263663.10 ENSP00000263663.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263663.10Link to Ensembl Protein Viewer:ENSP00000263663.4Re-query CCDS DB by Nucleotide ID:ENST00000263663Re-query CCDS DB by Protein ID:ENSP00000263663
Original member Current member NCBI NM_005680.3 NP_005671.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005680.3Link to Protein Sequence:NP_005671.3Re-query CCDS DB by Nucleotide ID:NM_005680Re-query CCDS DB by Protein ID:NP_005671Link to BLAST:NP_005671.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005671.3 588 Q53T94-1 588 100% 0 0

Chromosomal Locations for CCDS 33143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9843542 9843559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9845220 9845318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9849373 9849460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9851541 9851638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9854326 9854421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9868276 9868429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9875865 9876018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9882706 9882805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9904859 9905006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9910736 9910913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9911511 9911557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9913159 9913249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9919041 9919111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9919598 9919820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9933783 9933984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGACCTCGAGGAGGCGGAAGAGTTTAAAGAACGCTGTACTCAGTGTGCTGCTGTCTCATGGGGTCTTA
CTGATGAAGGCAAATATTATTGCACTTCTTGCCACAATGTTACAGAGAGATATCAGGAAGTTACAAACAC
TGATCTTATTCCTAATACCCAAATAAAAGCCCTCAACCGGGGGCTTAAAAAAAAAAACAATACTGAAAAA
GGCTGGGATTGGTATGTGTGTGAAGGTTTCCAGTATATTCTTTATCAACAAGCAGAAGCCTTAAAGAACC
TTGGAGTAGGCCCAGAGTTAAAGAACGATGTTTTACATAATTTTTGGAAGCGCTACCTTCAGAAGAGCAA
GCAGGCATATTGTAAGAACCCAGTTTATACCACTGGAAGGAAACCTACGGTATTAGAAGATAATCTAAGT
CATTCAGACTGGGCTAGTGAGCCTGAGCTGCTAAGTGATGTCAGCTGTCCTCCTTTTCTTGAAAGTGGAG
CGGAGTCTCAGTCTGACATCCACACTCGAAAACCTTTCCCCGTCAGCAAAGCATCACAATCAGAAACGTC
TGTCTGCTCTGGATCTCTGGATGGAGTTGAATACTCACAACGAAAGGAGAAGGGAATCGTGAAGATGACC
ATGCCACAGACACTTGCCTTCTGTTATCTGTCCTTACTTTGGCAGAGAGAAGCAATAACACTTTCAGATC
TTTTGAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCTTTTCAGCATTTTCCAGAACAGATGAA
ATTATATGGACGTGACAGAGGAATCTTTGGTATAGAGTCTTGGCCTGACTACGAGGACATCTACAAAAAA
ACAGTAGAAGTTGGAACATTTTTAGATTTGCCTCGTTTTCCAGACATAACTGAAGACTGCTATCTTCATC
CCAACATACTGTGTATGAAATACTTGATGGAAGTCAACCTCCCTGATGAAATGCATAGCTTAACTTGCCA
CGTGGTAAAAATGACTGGAATGGGAGAAGTGGATTTTCTGACATTTGATCCTATAGCTAAAATGGCAAAA
ACTGTTAAGTACGATGTACAAGCTGTAGCTATCATTGTGGTGGTATTGAAACTGCTCTTTCTATTGGATG
ACAGTTTCGAGTGGTCTTTGTCTAATCTTGCTGAAAAGCATAATGAAAAGAACAAAAAAGATAAGCCATG
GTTTGATTTCAGAAAGTGGTACCAAATTATGAAGAAAGCTTTTGATGAGAAAAAACAAAAATGGGAAGAA
GCAAGGGCCAAGTACCTGTGGAAAAGTGAAAAGCCACTCTACTACTCATTTGTCGACAAACCAGTAGCAT
ATAAAAAAAGAGAAATGGTGGTGAATCTACAGAAACAATTTAGCACACTGGTCGAGTCAACAGCAACTGC
TGGAAAAAAAAGCCCTTCAAGTTTTCAGTTCAACTGGACTGAAGAGGACACTGATAGAACGTGTTTCCAT
GGACACAGCCTTCAGGGAGTCCTGAAAGAGAAAGGCCAATCACTGCTGACTAAGAATTCATTATATTGGC
TTAGTACACAGAAATTCTGCAGATGCTATTGTACACATGTGACAACCTATGAAGAATCAAATTATTCTCT
GAGTTATCAGTTTATACTAAATCTCTTCTCCTTCCTGCTCAGAATAAAGACTTCCCTTCTCCATGAAGAA
GTGAGCTTAGTTGAGAAGAAACTTTTTGAGAAAAAATACAGTGTAAAAAGAAAGAAATCAAGATCCAAGA
AAGTGAGACGACATTGA

Translation (588 aa):
MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNRGLKKKNNTEK
GWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAYCKNPVYTTGRKPTVLEDNLS
HSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSKASQSETSVCSGSLDGVEYSQRKEKGIVKMT
MPQTLAFCYLSLLWQREAITLSDLLRFVEEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKK
TVEVGTFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAK
TVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWTEEDTDRTCFH
GHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEE
VSLVEKKLFEKKYSVKRKKSRSKKVRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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