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Report for CCDS13382.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13382.2 Public Homo sapiens 20 ZSWIM1 24 110 108 CCDS HistoryNCBI Gene:90204Re-query CCDS DB by CCDS ID:13382.2See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13382.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372523.1 ENSP00000361601.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372523.1Link to Ensembl Protein Viewer:ENSP00000361601.1Re-query CCDS DB by Nucleotide ID:ENST00000372523Re-query CCDS DB by Protein ID:ENSP00000361601
Original member Current member NCBI NM_080603.5 NP_542170.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080603.5Link to Protein Sequence:NP_542170.3Re-query CCDS DB by Nucleotide ID:NM_080603Re-query CCDS DB by Protein ID:NP_542170Link to BLAST:NP_542170.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542170.3 485 Q9BR11 485 100% 0 0

Chromosomal Locations for CCDS 13382.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45882593 45884050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGCTTGAGAGACTCAAAGCCCCGTGGTCAGCTGCCCTGCAAAGAAAGTATTTTGACCTTGGCATTTGGA
CAGCTCCCATCTCTCCCATGGCCCTGACAATGCTGAATGGGCTCCTGATTAAGGACTCAAGCCCACCTAT
GCTGCTGCACCAGGTTAACAAGACTGCCCAGTTAGATACCTTCAACTACCAGAGCTGCTTTATGCAAAGT
GTCTTTGACCATTTCCCTGAGATCTTATTTATCCACCGGACCTATAACCCAAGGGGTAAGGTCTTATATA
CCTTCCTGGTGGATGGACCTCGGGTGCAGCTGGAGGGTCATCTTGCCCGAGCAGTCTACTTTGCCATCCC
TGCCAAGGAGGACACTGAAGGCCTGGCCCAGATGTTCCAAGTATTCAAGAAGTTTAATCCAGCATGGGAG
AGAGTCTGTACCATCCTGGTGGATCCTCATTTCCTTCCACTGCCTATCCTAGCTATGGAGTTCCCCACAG
CTGAGGTCCTTCTCTCAGCCTTCCACATTTGTAAGTTCCTCCAGGCCAAGTTCTATCAGCTGTCCCTTGA
ACGGCCCGTGGAAAGGCTGCTCCTGACCTCCCTGCAGAGCACAATGTGCTCAGCCACAGCAGGCAACCTG
AGAAAGTTGTATACACTCCTGAGCAACTGCATCCCTCCAGCCAAGCTGCCCGAGCTTCACTCACACTGGC
TGCTCAACGACCGCATCTGGCTGGCTCACCGCTGGAGAAGCCGAGCTGAGAGCAGCCACTACTTCCAGAG
CCTCGAGGTCACCACCCACATCCTCAGCCAGTTCTTTGGTACCACCCCATCTGAGAAACAAGGTATGGCT
TCTCTGTTCCGTTACATGCAGCAGAACTCTGCAGACAAGGCAAACTTCAACCAGGGCCTGTGTGCCCAGA
ACAATCATGCTCCCTCAGACACCATCCCCGAAAGCCCCAAACTGGAGCAGCTGGTAGAATCCCACATCCA
GCACTCCCTCAATGCCATCTGCACAGGGCCAGCAGCCCAACTGTGCCTGGGCGAGCTTGCTGTGGTCCAG
AAATCCACACACCTCATTGGCTCTGGCTCAGAAAAGATGAACATACAGATCCTGGAAGATACCCATAAGG
TGCAGCCCCAGCCCCCTGCCAGCTGCAGCTGCTACTTTAACCAGGCCTTCCACCTGCCCTGCCGCCACAT
CCTAGCCATGCTCAGTGCCCGCCGCCAGGTGCTCCAGCCCGACATGCTGCCGGCTCAGTGGACGGCAGGC
TGTGCTACCAGTCTAGACAGCATCCTGGGCAGCAAGTGGAGTGAGACCCTGGATAAGCACCTGGCAGTGA
CTCACCTCACCGAGGAGGTGGGTCAGCTGTTGCAGCACTGCACCAAGGAGGAGTTTGAGCGGAGGTATAG
CACCCTGCGGGAACTGGCCGACAGCTGGATTGGGCCTTATGAGCAGGTCCAACTCTGA

Translation (485 aa):
MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDTFNYQSCFMQS
VFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKEDTEGLAQMFQVFKKFNPAWE
RVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAKFYQLSLERPVERLLLTSLQSTMCSATAGNL
RKLYTLLSNCIPPAKLPELHSHWLLNDRIWLAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMA
SLFRYMQQNSADKANFNQGLCAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQ
KSTHLIGSGSEKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQPDMLPAQWTAG
CATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPYEQVQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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